ambit2.core.io.fp

Class MultiFingerprintsWriter

java.lang.Object

org.openscience.cdk.io.ChemObjectIO

org.openscience.cdk.io.DefaultChemObjectWriter

ambit2.core.io.fp.MultiFingerprintsWriter

All Implemented Interfaces:

Closeable, AutoCloseable, org.openscience.cdk.io.IChemObjectIO, org.openscience.cdk.io.IChemObjectWriter

public class MultiFingerprintsWriter
extends org.openscience.cdk.io.DefaultChemObjectWriter

Field Summary

Fields

Modifier and Type	Field and Description
protected org.apache.commons.csv.CSVFormat	CSVFORMAT_SPACE
protected String	id
protected File	prefix
protected Object[]	tags
protected String[]	tags_to_keep

Constructor Summary

Constructors

Constructor and Description
MultiFingerprintsWriter(File prefix, List<org.openscience.cdk.fingerprint.IFingerprinter> fps, String[] tags_to_keep)

Method Summary

Modifier and Type	Method and Description
boolean	accepts(Class<? extends org.openscience.cdk.interfaces.IChemObject> classObject)
void	close()
org.openscience.cdk.io.formats.IResourceFormat	getFormat()
protected org.apache.commons.csv.CSVPrinter	getWriter(String property)
protected Object[]	mol2record(Object[] tags, String propertyname, Object propertyvalue)
void	setWriter(OutputStream writer)
void	setWriter(Writer writer)
void	write(org.openscience.cdk.interfaces.IChemObject mol)

Methods inherited from class org.openscience.cdk.io.ChemObjectIO

addChemObjectIOListener, addSetting, addSettings, fireIOSettingQuestion, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.openscience.cdk.io.IChemObjectIO

addChemObjectIOListener, addSetting, addSettings, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener

Field Detail

id

protected String id

prefix

protected File prefix

CSVFORMAT_SPACE

protected org.apache.commons.csv.CSVFormat CSVFORMAT_SPACE

tags_to_keep

protected String[] tags_to_keep

tags

protected Object[] tags

Constructor Detail

MultiFingerprintsWriter

public MultiFingerprintsWriter(File prefix,
                               List<org.openscience.cdk.fingerprint.IFingerprinter> fps,
                               String[] tags_to_keep)

Method Detail

getWriter

protected org.apache.commons.csv.CSVPrinter getWriter(String property)

write

public void write(org.openscience.cdk.interfaces.IChemObject mol)
           throws org.openscience.cdk.exception.CDKException

Throws:

org.openscience.cdk.exception.CDKException

mol2record

protected Object[] mol2record(Object[] tags,
                              String propertyname,
                              Object propertyvalue)

setWriter

public void setWriter(Writer writer)
               throws org.openscience.cdk.exception.CDKException

Throws:

org.openscience.cdk.exception.CDKException

setWriter

public void setWriter(OutputStream writer)
               throws org.openscience.cdk.exception.CDKException

Throws:

org.openscience.cdk.exception.CDKException

getFormat

public org.openscience.cdk.io.formats.IResourceFormat getFormat()

accepts

public boolean accepts(Class<? extends org.openscience.cdk.interfaces.IChemObject> classObject)

close

public void close()
           throws IOException

Throws:

IOException