MalariaHTSDataDelimitedReader (Ambit 2 4.0.1-SNAPSHOT API)

java.lang.Object
- org.openscience.cdk.io.ChemObjectIO
- - org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader
  - - ambit2.core.io.IteratingFilesWithHeaderReader<COLUMN>
    - - ambit2.core.io.IteratingDelimitedFileReaderComplexHeader<String>
      - ambit2.core.io.IteratingDelimitedFileReader
        
        ambit2.core.io.sj.MalariaHTSDataDelimitedReader

All Implemented Interfaces:

Closeable, AutoCloseable, Iterator, org.openscience.cdk.io.IChemObjectIO, org.openscience.cdk.io.IChemObjectReader, org.openscience.cdk.io.iterator.IIteratingChemObjectReader
```
public class MalariaHTSDataDelimitedReader
extends IteratingDelimitedFileReader
```
XLS file SAMPLE batch SJ000001054 1 SJ000001111 1 SJ000001119 1 SDF file SJ000001054-1

Author:

nina

- Nested Class Summary
  - Nested classes/interfaces inherited from interface org.openscience.cdk.io.IChemObjectReader
    org.openscience.cdk.io.IChemObjectReader.Mode
- Field Summary
  
  Fields
  Modifier and Type Field and Description
  
  protected static String col_batch
  
  protected static String col_SAMPLE
  - Fields inherited from class ambit2.core.io.IteratingDelimitedFileReaderComplexHeader
    casTransformer, commentChar, format, values
  - Fields inherited from class ambit2.core.io.IteratingFilesWithHeaderReader
    defaultSMILESHeader, header, inchiFactory, inchiIndex, logger, numberOfHeaderLines, optionalSMILESHeader, smilesIndex, sp, timeout
  - Fields inherited from class org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader
    errorHandler, mode
- Constructor Summary
  
  Constructors
  Constructor and Description
  
  MalariaHTSDataDelimitedReader(InputStream in)
- Method Summary
  
  All Methods Instance Methods Concrete Methods
  Modifier and Type Method and Description
  
  Object next()
  - Methods inherited from class ambit2.core.io.IteratingDelimitedFileReader
    createPropertyByColumnName, getSmilesHeader
  - Methods inherited from class ambit2.core.io.IteratingDelimitedFileReaderComplexHeader
    close, createHeader, extractRowKeyAndData, getCommentChar, getFormat, getReference, hasNext, processComment, processHeader, remove, removeStringDelimiters, setCommentChar, setReader, setReader, skipLines, toString
  - Methods inherited from class ambit2.core.io.IteratingFilesWithHeaderReader
    addHeaderColumn, getHeaderColumn, getNumberOfColumns, getNumberOfHeaderLines, getOptionalSMILESHeader, getTimeout, isHeaderEmpty, setHeaderColumn, setNumberOfHeaderLines, setOptionalSMILESHeader, setTimeout, updateHeaderColumn
  - Methods inherited from class org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader
    accepts, handleError, handleError, handleError, handleError, setErrorHandler, setReaderMode
  - Methods inherited from class org.openscience.cdk.io.ChemObjectIO
    addChemObjectIOListener, addSetting, addSettings, fireIOSettingQuestion, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener
  - Methods inherited from class java.lang.Object
    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
  - Methods inherited from interface org.openscience.cdk.io.IChemObjectReader
    handleError, handleError, handleError, handleError, setErrorHandler, setReader, setReader, setReaderMode
  - Methods inherited from interface org.openscience.cdk.io.IChemObjectIO
    accepts, addChemObjectIOListener, addSetting, addSettings, close, getFormat, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener
  - Methods inherited from interface java.util.Iterator
    forEachRemaining, hasNext, remove

Fields
Modifier and Type	Field and Description
`protected static String`	`col_batch`
`protected static String`	`col_SAMPLE`

Constructors
Constructor and Description
`MalariaHTSDataDelimitedReader(InputStream in)`

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`Object`	`next()`

- Field Detail
  - col_SAMPLE
```
protected static final String col_SAMPLE
```
    See Also:
    
    Constant Field Values
  - col_batch
```
protected static final String col_batch
```
    See Also:
    
    Constant Field Values
- Constructor Detail
  - MalariaHTSDataDelimitedReader
```
public MalariaHTSDataDelimitedReader(InputStream in)
                              throws org.openscience.cdk.exception.CDKException
```
    Throws:
    
    org.openscience.cdk.exception.CDKException
- Method Detail
  - next
```
public Object next()
```
    Specified by:
    
    next in interface Iterator
    
    Overrides:
    
    next in class IteratingDelimitedFileReaderComplexHeader<String>

Class MalariaHTSDataDelimitedReader

Nested Class Summary

Nested classes/interfaces inherited from interface org.openscience.cdk.io.IChemObjectReader

Field Summary

Fields inherited from class ambit2.core.io.IteratingDelimitedFileReaderComplexHeader

Fields inherited from class ambit2.core.io.IteratingFilesWithHeaderReader

Fields inherited from class org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader

Constructor Summary

Method Summary

Methods inherited from class ambit2.core.io.IteratingDelimitedFileReader

Methods inherited from class ambit2.core.io.IteratingDelimitedFileReaderComplexHeader

Methods inherited from class ambit2.core.io.IteratingFilesWithHeaderReader

Methods inherited from class org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader

Methods inherited from class org.openscience.cdk.io.ChemObjectIO

Methods inherited from class java.lang.Object

Methods inherited from interface org.openscience.cdk.io.IChemObjectReader

Methods inherited from interface org.openscience.cdk.io.IChemObjectIO

Methods inherited from interface java.util.Iterator

Field Detail

col_SAMPLE

col_batch

Constructor Detail

MalariaHTSDataDelimitedReader

Method Detail

next