ambit2.core.io.study

Class StudyFormatter

java.lang.Object

ambit2.core.io.study.StudyFormatter

public class StudyFormatter
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
static int	_MAX_COL
protected com.fasterxml.jackson.databind.JsonNode	columns
protected Logger	logger
protected com.fasterxml.jackson.databind.ObjectMapper	mapper

Constructor Summary

Constructors

Constructor and Description
StudyFormatter()
StudyFormatter(String configFile)

Method Summary

Modifier and Type	Method and Description
protected void	assignTitle(com.fasterxml.jackson.databind.node.ObjectNode config, com.fasterxml.jackson.databind.node.ObjectNode defaultConfig, String value)
int	format(ProtocolApplication<Protocol,String,String,Object,String> pa, IStudyPrinter printer)
String	format(SubstanceProperty property, IValue value)
String	format(SubstanceProperty property, MultiValue<IValue> value)
String	format(SubstanceProperty property, Object value)
String	format(SubstanceProperty property, String value)
void	formatCategoryHeader(String category, IStudyPrinter printer)
protected void	formatParams(StringBuilder b, com.fasterxml.jackson.databind.node.ObjectNode conditions, PropertyAnnotations pannotations)
protected String	formatValue(EffectRecord<String,Object,String> effect)
protected String	formatValue(Value effect)
com.fasterxml.jackson.databind.node.ObjectNode	getCategoryConfig(Protocol._categories category)
com.fasterxml.jackson.databind.node.ObjectNode	getCitationConfig(com.fasterxml.jackson.databind.node.ObjectNode column)
com.fasterxml.jackson.databind.node.ObjectNode	getConditionsConfig(com.fasterxml.jackson.databind.node.ObjectNode column)
com.fasterxml.jackson.databind.node.ObjectNode	getEffectsConfig(com.fasterxml.jackson.databind.node.ObjectNode column)
com.fasterxml.jackson.databind.node.ObjectNode	getEndpointConfig(com.fasterxml.jackson.databind.node.ObjectNode column)
com.fasterxml.jackson.databind.node.ObjectNode	getGuidelineConfig(com.fasterxml.jackson.databind.node.ObjectNode column)
com.fasterxml.jackson.databind.node.ObjectNode	getInterpretationConfig(com.fasterxml.jackson.databind.node.ObjectNode column)
com.fasterxml.jackson.databind.node.ObjectNode	getInterpretationResultConfig(com.fasterxml.jackson.databind.node.ObjectNode column)
com.fasterxml.jackson.databind.node.ObjectNode	getInterpretationResultCriteria(com.fasterxml.jackson.databind.node.ObjectNode column)
int	getOrder(com.fasterxml.jackson.databind.node.ObjectNode config)
com.fasterxml.jackson.databind.node.ObjectNode	getOwnerConfig(com.fasterxml.jackson.databind.node.ObjectNode column)
com.fasterxml.jackson.databind.node.ObjectNode	getParametersConfig(com.fasterxml.jackson.databind.node.ObjectNode column)
com.fasterxml.jackson.databind.node.ObjectNode	getProtocolConfig(com.fasterxml.jackson.databind.node.ObjectNode column)
com.fasterxml.jackson.databind.node.ObjectNode	getResultConfig(com.fasterxml.jackson.databind.node.ObjectNode column)
com.fasterxml.jackson.databind.node.ObjectNode	getTextResultConfig(com.fasterxml.jackson.databind.node.ObjectNode column)
boolean	inMatrix(com.fasterxml.jackson.databind.node.ObjectNode config)
boolean	isVisible(com.fasterxml.jackson.databind.node.ObjectNode config)
protected void	printConditions(int row, IParams params, com.fasterxml.jackson.databind.node.ObjectNode config, IStudyPrinter printer, ReliabilityParams._r_flags flag)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

protected Logger logger

columns

protected com.fasterxml.jackson.databind.JsonNode columns

_MAX_COL

public static final int _MAX_COL

See Also:

Constant Field Values

mapper

protected com.fasterxml.jackson.databind.ObjectMapper mapper

Constructor Detail

StudyFormatter

public StudyFormatter()

StudyFormatter

public StudyFormatter(String configFile)

Method Detail

format

public String format(SubstanceProperty property,
                     Object value)
              throws Exception

Throws:

Exception

format

public String format(SubstanceProperty property,
                     String value)
              throws Exception

Throws:

Exception

formatParams

protected void formatParams(StringBuilder b,
                            com.fasterxml.jackson.databind.node.ObjectNode conditions,
                            PropertyAnnotations pannotations)

getCategoryConfig

public com.fasterxml.jackson.databind.node.ObjectNode getCategoryConfig(Protocol._categories category)

getConditionsConfig

public com.fasterxml.jackson.databind.node.ObjectNode getConditionsConfig(com.fasterxml.jackson.databind.node.ObjectNode column)

getParametersConfig

public com.fasterxml.jackson.databind.node.ObjectNode getParametersConfig(com.fasterxml.jackson.databind.node.ObjectNode column)

getProtocolConfig

public com.fasterxml.jackson.databind.node.ObjectNode getProtocolConfig(com.fasterxml.jackson.databind.node.ObjectNode column)

getEffectsConfig

public com.fasterxml.jackson.databind.node.ObjectNode getEffectsConfig(com.fasterxml.jackson.databind.node.ObjectNode column)

getInterpretationConfig

public com.fasterxml.jackson.databind.node.ObjectNode getInterpretationConfig(com.fasterxml.jackson.databind.node.ObjectNode column)

getInterpretationResultConfig

public com.fasterxml.jackson.databind.node.ObjectNode getInterpretationResultConfig(com.fasterxml.jackson.databind.node.ObjectNode column)

getInterpretationResultCriteria

public com.fasterxml.jackson.databind.node.ObjectNode getInterpretationResultCriteria(com.fasterxml.jackson.databind.node.ObjectNode column)

getGuidelineConfig

public com.fasterxml.jackson.databind.node.ObjectNode getGuidelineConfig(com.fasterxml.jackson.databind.node.ObjectNode column)

getCitationConfig

public com.fasterxml.jackson.databind.node.ObjectNode getCitationConfig(com.fasterxml.jackson.databind.node.ObjectNode column)

getOwnerConfig

public com.fasterxml.jackson.databind.node.ObjectNode getOwnerConfig(com.fasterxml.jackson.databind.node.ObjectNode column)

getEndpointConfig

public com.fasterxml.jackson.databind.node.ObjectNode getEndpointConfig(com.fasterxml.jackson.databind.node.ObjectNode column)

getResultConfig

public com.fasterxml.jackson.databind.node.ObjectNode getResultConfig(com.fasterxml.jackson.databind.node.ObjectNode column)

getTextResultConfig

public com.fasterxml.jackson.databind.node.ObjectNode getTextResultConfig(com.fasterxml.jackson.databind.node.ObjectNode column)

inMatrix

public boolean inMatrix(com.fasterxml.jackson.databind.node.ObjectNode config)

isVisible

public boolean isVisible(com.fasterxml.jackson.databind.node.ObjectNode config)

getOrder

public int getOrder(com.fasterxml.jackson.databind.node.ObjectNode config)

format

public String format(SubstanceProperty property,
                     IValue value)
              throws Exception

Throws:

Exception

format

public String format(SubstanceProperty property,
                     MultiValue<IValue> value)
              throws Exception

Throws:

Exception

assignTitle

protected void assignTitle(com.fasterxml.jackson.databind.node.ObjectNode config,
                           com.fasterxml.jackson.databind.node.ObjectNode defaultConfig,
                           String value)

formatCategoryHeader

public void formatCategoryHeader(String category,
                                 IStudyPrinter printer)
                          throws Exception

Throws:

Exception

format

public int format(ProtocolApplication<Protocol,String,String,Object,String> pa,
                  IStudyPrinter printer)
           throws Exception

Throws:

Exception

formatValue

protected String formatValue(Value effect)

formatValue

protected String formatValue(EffectRecord<String,Object,String> effect)

printConditions

protected void printConditions(int row,
                               IParams params,
                               com.fasterxml.jackson.databind.node.ObjectNode config,
                               IStudyPrinter printer,
                               ReliabilityParams._r_flags flag)