ambit2.db.processors

Class PropertyImporter

java.lang.Object

net.idea.modbcum.p.DefaultAmbitProcessor<Target,Result>

net.idea.modbcum.p.AbstractDBProcessor<Target,Result>

ambit2.db.processors.AbstractRepositoryWriter<org.openscience.cdk.interfaces.IAtomContainer,List<IStructureRecord>>

ambit2.db.processors.PropertyImporter

All Implemented Interfaces:

Serializable, net.idea.modbcum.i.IDBProcessor<org.openscience.cdk.interfaces.IAtomContainer,List<IStructureRecord>>, net.idea.modbcum.i.processors.IProcessor<org.openscience.cdk.interfaces.IAtomContainer,List<IStructureRecord>>

public class PropertyImporter
extends AbstractRepositoryWriter<org.openscience.cdk.interfaces.IAtomContainer,List<IStructureRecord>>

Imports only properties, doesn't write structures - TODO merge with repository writer

Author:

nina

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class ambit2.db.processors.AbstractRepositoryWriter

AbstractRepositoryWriter.OP

Field Summary

Fields

Modifier and Type	Field and Description
protected DatasetAddStructure	datasetAddStruc
protected PropertyValuesWriter	propertyWriter
protected AbstractStructureQuery	query_property
protected IStructureKey	queryKey

Fields inherited from class ambit2.db.processors.AbstractRepositoryWriter

exec, operation, queryexec

Fields inherited from class net.idea.modbcum.p.AbstractDBProcessor

closeConnection, connection

Fields inherited from class net.idea.modbcum.p.DefaultAmbitProcessor

enabled, logger, propertyChangeSupport

Constructor Summary

Constructors

Constructor and Description
PropertyImporter()

Method Summary

Modifier and Type	Method and Description
void	close()
SourceDataset	getDataset()
IStructureKey	getPropertyKey()
protected Object	getValue(org.openscience.cdk.interfaces.IAtomContainer molecule)
void	open()
void	setConnection(Connection connection)
void	setDataset(SourceDataset dataset)
void	setPropertyKey(IStructureKey propertyKey)
List<IStructureRecord>	write(org.openscience.cdk.interfaces.IAtomContainer molecule)
protected void	writeDataset(IStructureRecord structure)

Methods inherited from class ambit2.db.processors.AbstractRepositoryWriter

create, delete, getOperation, prepareStatement, process, read, setOperation, transaction, update

Methods inherited from class net.idea.modbcum.p.AbstractDBProcessor

getConnection, isCloseConnection, isEnabled, setCloseConnection

Methods inherited from class net.idea.modbcum.p.DefaultAmbitProcessor

addPropertyChangeListener, addPropertyChangeListener, getID, removePropertyChangeListener, removePropertyChangeListener, setEnabled, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.idea.modbcum.i.processors.IProcessor

getID, setEnabled

Field Detail

propertyWriter

protected PropertyValuesWriter propertyWriter

queryKey

protected IStructureKey queryKey

query_property

protected AbstractStructureQuery query_property

datasetAddStruc

protected DatasetAddStructure datasetAddStruc

Constructor Detail

PropertyImporter

public PropertyImporter()

Method Detail

getPropertyKey

public IStructureKey getPropertyKey()

setPropertyKey

public void setPropertyKey(IStructureKey propertyKey)

setConnection

public void setConnection(Connection connection)
                   throws net.idea.modbcum.i.exceptions.DbAmbitException

Specified by:

setConnection in interface net.idea.modbcum.i.IDBProcessor<org.openscience.cdk.interfaces.IAtomContainer,List<IStructureRecord>>

Overrides:

setConnection in class AbstractRepositoryWriter<org.openscience.cdk.interfaces.IAtomContainer,List<IStructureRecord>>

Throws:

net.idea.modbcum.i.exceptions.DbAmbitException

open

public void open()
          throws net.idea.modbcum.i.exceptions.DbAmbitException

Specified by:

open in interface net.idea.modbcum.i.processors.IProcessor<org.openscience.cdk.interfaces.IAtomContainer,List<IStructureRecord>>

Overrides:

open in class AbstractRepositoryWriter<org.openscience.cdk.interfaces.IAtomContainer,List<IStructureRecord>>

Throws:

net.idea.modbcum.i.exceptions.DbAmbitException

close

public void close()
           throws Exception

Specified by:

close in interface net.idea.modbcum.i.processors.IProcessor<org.openscience.cdk.interfaces.IAtomContainer,List<IStructureRecord>>

Overrides:

close in class AbstractRepositoryWriter<org.openscience.cdk.interfaces.IAtomContainer,List<IStructureRecord>>

Throws:

Exception

setDataset

public void setDataset(SourceDataset dataset)

getDataset

public SourceDataset getDataset()

getValue

protected Object getValue(org.openscience.cdk.interfaces.IAtomContainer molecule)
                   throws Exception

Throws:

Exception

write

public List<IStructureRecord> write(org.openscience.cdk.interfaces.IAtomContainer molecule)
                             throws SQLException,
                                    OperationNotSupportedException,
                                    net.idea.modbcum.i.exceptions.AmbitException

Overrides:

write in class AbstractRepositoryWriter<org.openscience.cdk.interfaces.IAtomContainer,List<IStructureRecord>>

Throws:

SQLException

OperationNotSupportedException

net.idea.modbcum.i.exceptions.AmbitException

writeDataset

protected void writeDataset(IStructureRecord structure)
                     throws SQLException,
                            net.idea.modbcum.i.exceptions.AmbitException,
                            OperationNotSupportedException

Throws:

SQLException

net.idea.modbcum.i.exceptions.AmbitException

OperationNotSupportedException