ambit2.db.reporters

Class CMLReporter<Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>>

java.lang.Object

net.idea.modbcum.p.DefaultAmbitProcessor<Target,Result>

net.idea.modbcum.p.AbstractDBProcessor<Q,Output>

net.idea.modbcum.r.QueryAbstractReporter<T,Q,Output>

net.idea.modbcum.r.QueryReporter<IStructureRecord,Q,Output>

ambit2.db.reporters.QueryStructureReporter<Q,Writer>

ambit2.db.reporters.CMLReporter<Q>

Type Parameters:

Q -

All Implemented Interfaces:

Serializable, net.idea.modbcum.i.IDBProcessor<Q,Writer>, net.idea.modbcum.i.processors.IProcessor<Q,Writer>, net.idea.modbcum.i.reporter.Reporter<Q,Writer>

public class CMLReporter<Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>>
extends QueryStructureReporter<Q,Writer>

Writes query results as CML . TODO The output is not correct for multiple molecules!!!!

  
    
      
        1
        1
      
      
        2
        2
      
    
    
      
    
  
  
    
      
      
    
    
      
    
  

 

Author:

nina

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected MoleculeReader	reader

Fields inherited from class net.idea.modbcum.r.QueryAbstractReporter

autoCommit, batch, licenseURI, maxRecords, output, processors, showFooter, showHeader, startTime, timeout

Fields inherited from class net.idea.modbcum.p.AbstractDBProcessor

closeConnection, connection

Fields inherited from class net.idea.modbcum.p.DefaultAmbitProcessor

enabled, logger, propertyChangeSupport

Constructor Summary

Constructors

Constructor and Description
CMLReporter()

Method Summary

Modifier and Type	Method and Description
void	footer(Writer output, Q query)
String	getFileExtension()
void	header(Writer output, Q query)
void	open()
Object	processItem(IStructureRecord item)

Methods inherited from class ambit2.db.reporters.QueryStructureReporter

createBatch, isIncludeLicenseInTextFiles

Methods inherited from class net.idea.modbcum.r.QueryAbstractReporter

getLicenseURI, getMaxRecords, getOutput, getProcessors, getStartTime, getTimeout, isAutoCommit, isShowFooter, isShowHeader, process, setAutoCommit, setCloseConnection, setLicenseURI, setMaxRecords, setOutput, setProcessors, setShowFooter, setShowHeader, setStartTime, setTimeout, wrapup

Methods inherited from class net.idea.modbcum.p.AbstractDBProcessor

close, getConnection, isCloseConnection, isEnabled, setConnection

Methods inherited from class net.idea.modbcum.p.DefaultAmbitProcessor

addPropertyChangeListener, addPropertyChangeListener, getID, removePropertyChangeListener, removePropertyChangeListener, setEnabled, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.idea.modbcum.i.reporter.Reporter

close

Methods inherited from interface net.idea.modbcum.i.processors.IProcessor

getID, isEnabled, setEnabled

Field Detail

reader

protected MoleculeReader reader

Constructor Detail

CMLReporter

public CMLReporter()

Method Detail

processItem

public Object processItem(IStructureRecord item)
                   throws net.idea.modbcum.i.exceptions.AmbitException

Specified by:

processItem in class net.idea.modbcum.r.QueryAbstractReporter<IStructureRecord,Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,Writer>

Throws:

net.idea.modbcum.i.exceptions.AmbitException

open

public void open()
          throws net.idea.modbcum.i.exceptions.DbAmbitException

Specified by:

open in interface net.idea.modbcum.i.processors.IProcessor<Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,Writer>

Overrides:

open in class net.idea.modbcum.p.DefaultAmbitProcessor<Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,Writer>

Throws:

net.idea.modbcum.i.exceptions.DbAmbitException

footer

public void footer(Writer output,
                   Q query)

Specified by:

footer in class net.idea.modbcum.r.QueryAbstractReporter<IStructureRecord,Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,Writer>

header

public void header(Writer output,
                   Q query)

Specified by:

header in class net.idea.modbcum.r.QueryAbstractReporter<IStructureRecord,Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,Writer>

getFileExtension

public String getFileExtension()

Specified by:

getFileExtension in interface net.idea.modbcum.i.reporter.Reporter<Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,Writer>

Overrides:

getFileExtension in class net.idea.modbcum.r.QueryAbstractReporter<IStructureRecord,Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,Writer>