ambit2.db.reporters

Class PDFReporter<Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>>

java.lang.Object

net.idea.modbcum.p.DefaultAmbitProcessor<Target,Result>

net.idea.modbcum.p.AbstractDBProcessor<Q,Output>

net.idea.modbcum.r.QueryAbstractReporter<T,Q,Output>

net.idea.modbcum.r.QueryReporter<IStructureRecord,Q,Output>

ambit2.db.reporters.QueryStructureReporter<Q,Output>

ambit2.db.reporters.QueryHeaderReporter<Q,com.lowagie.text.Document>

ambit2.db.reporters.PDFReporter<Q>

Type Parameters:

Q -

All Implemented Interfaces:

Serializable, net.idea.modbcum.i.IDBProcessor<Q,com.lowagie.text.Document>, net.idea.modbcum.i.processors.IProcessor<Q,com.lowagie.text.Document>, net.idea.modbcum.i.reporter.Reporter<Q,com.lowagie.text.Document>

public class PDFReporter<Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>>
extends QueryHeaderReporter<Q,com.lowagie.text.Document>

Generates PDF

Author:

nina TODO make use of ImageReporter

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected CompoundImageTools	depict
protected com.lowagie.text.Font	font
protected MoleculeReader	reader
protected com.lowagie.text.pdf.PdfPTable	table

Fields inherited from class ambit2.db.reporters.QueryHeaderReporter

groupProperties, header, includeMol, template

Fields inherited from class net.idea.modbcum.r.QueryAbstractReporter

autoCommit, batch, licenseURI, maxRecords, output, processors, showFooter, showHeader, startTime, timeout

Fields inherited from class net.idea.modbcum.p.AbstractDBProcessor

closeConnection, connection

Fields inherited from class net.idea.modbcum.p.DefaultAmbitProcessor

enabled, logger, propertyChangeSupport

Constructor Summary

Constructors

Constructor and Description
PDFReporter()
PDFReporter(Template template)
PDFReporter(Template template, Profile groupedPrperties)

Method Summary

Modifier and Type	Method and Description
void	close()
void	footer(com.lowagie.text.Document output, Q query)
String	getFileExtension()
void	header(com.lowagie.text.Document output, Q query)
void	open()
Object	processItem(IStructureRecord item)
void	setOutput(com.lowagie.text.Document pdfDoc)
protected void	writeHeader(com.lowagie.text.Document writer)
protected void	writeMolecule(org.openscience.cdk.interfaces.IAtomContainer molecule)

Methods inherited from class ambit2.db.reporters.QueryHeaderReporter

configureProcessors, configurePropertyProcessors, getGroupProperties, getHeader, getTemplate, isIncludeMol, setGroupProperties, setTemplate, template2Header

Methods inherited from class ambit2.db.reporters.QueryStructureReporter

createBatch, isIncludeLicenseInTextFiles

Methods inherited from class net.idea.modbcum.r.QueryAbstractReporter

getLicenseURI, getMaxRecords, getOutput, getProcessors, getStartTime, getTimeout, isAutoCommit, isShowFooter, isShowHeader, process, setAutoCommit, setCloseConnection, setLicenseURI, setMaxRecords, setProcessors, setShowFooter, setShowHeader, setStartTime, setTimeout, wrapup

Methods inherited from class net.idea.modbcum.p.AbstractDBProcessor

getConnection, isCloseConnection, isEnabled, setConnection

Methods inherited from class net.idea.modbcum.p.DefaultAmbitProcessor

addPropertyChangeListener, addPropertyChangeListener, getID, removePropertyChangeListener, removePropertyChangeListener, setEnabled, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.idea.modbcum.i.processors.IProcessor

getID, isEnabled, setEnabled

Field Detail

reader

protected MoleculeReader reader

depict

protected CompoundImageTools depict

table

protected com.lowagie.text.pdf.PdfPTable table

font

protected com.lowagie.text.Font font

Constructor Detail

PDFReporter

public PDFReporter()

PDFReporter

public PDFReporter(Template template)

PDFReporter

public PDFReporter(Template template,
                   Profile groupedPrperties)

Method Detail

setOutput

public void setOutput(com.lowagie.text.Document pdfDoc)
               throws Exception

Specified by:

setOutput in interface net.idea.modbcum.i.reporter.Reporter<Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,com.lowagie.text.Document>

Overrides:

setOutput in class net.idea.modbcum.r.QueryAbstractReporter<IStructureRecord,Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,com.lowagie.text.Document>

Throws:

Exception

writeHeader

protected void writeHeader(com.lowagie.text.Document writer)
                    throws IOException

Throws:

IOException

close

public void close()
           throws Exception

Specified by:

close in interface net.idea.modbcum.i.processors.IProcessor<Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,com.lowagie.text.Document>

Specified by:

close in interface net.idea.modbcum.i.reporter.Reporter<Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,com.lowagie.text.Document>

Overrides:

close in class net.idea.modbcum.p.AbstractDBProcessor<Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,com.lowagie.text.Document>

Throws:

Exception

header

public void header(com.lowagie.text.Document output,
                   Q query)

Specified by:

header in class net.idea.modbcum.r.QueryAbstractReporter<IStructureRecord,Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,com.lowagie.text.Document>

footer

public void footer(com.lowagie.text.Document output,
                   Q query)

Specified by:

footer in class net.idea.modbcum.r.QueryAbstractReporter<IStructureRecord,Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,com.lowagie.text.Document>

processItem

public Object processItem(IStructureRecord item)
                   throws net.idea.modbcum.i.exceptions.AmbitException

Specified by:

processItem in class net.idea.modbcum.r.QueryAbstractReporter<IStructureRecord,Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,com.lowagie.text.Document>

Throws:

net.idea.modbcum.i.exceptions.AmbitException

writeMolecule

protected void writeMolecule(org.openscience.cdk.interfaces.IAtomContainer molecule)

open

public void open()
          throws net.idea.modbcum.i.exceptions.DbAmbitException

Specified by:

open in interface net.idea.modbcum.i.processors.IProcessor<Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,com.lowagie.text.Document>

Overrides:

open in class net.idea.modbcum.p.DefaultAmbitProcessor<Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,com.lowagie.text.Document>

Throws:

net.idea.modbcum.i.exceptions.DbAmbitException

getFileExtension

public String getFileExtension()

Specified by:

getFileExtension in interface net.idea.modbcum.i.reporter.Reporter<Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,com.lowagie.text.Document>

Overrides:

getFileExtension in class net.idea.modbcum.r.QueryAbstractReporter<IStructureRecord,Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,com.lowagie.text.Document>