ambit2.db.search.property

Class QueryPairwiseTanimoto

java.lang.Object

ambit2.db.search.AbstractQuery<ISourceDataset,ISourceDataset,net.idea.modbcum.q.conditions.BooleanCondition,SimilarityRelation>

ambit2.db.search.property.QueryPairwiseTanimoto

All Implemented Interfaces:

Serializable, net.idea.modbcum.i.IParameterizedQuery<ISourceDataset,ISourceDataset,net.idea.modbcum.q.conditions.BooleanCondition>, net.idea.modbcum.i.IQueryObject<SimilarityRelation>, net.idea.modbcum.i.IQueryRetrieval<SimilarityRelation>, net.idea.modbcum.i.IRetrieval<SimilarityRelation>, net.idea.modbcum.i.IStatement

Direct Known Subclasses:

QueryPairwiseTanimotoAndProperty

public class QueryPairwiseTanimoto
extends AbstractQuery<ISourceDataset,ISourceDataset,net.idea.modbcum.q.conditions.BooleanCondition,SimilarityRelation>
implements net.idea.modbcum.i.IQueryRetrieval<SimilarityRelation>

Generatise pairwise similarities between structures in given datasets

Author:

nina

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected SimilarityRelation	relation
protected double	threshold

Fields inherited from class ambit2.db.search.AbstractQuery

condition, fieldname, id, logger, maxRecords, name, page, selected, value

Fields inherited from interface net.idea.modbcum.i.IQueryRetrieval

NaN

Constructor Summary

Constructors

Constructor and Description
QueryPairwiseTanimoto()

Method Summary

Modifier and Type	Method and Description
double	calculateMetric(SimilarityRelation object)
SimilarityRelation	getObject(ResultSet rs)
List<net.idea.modbcum.i.query.QueryParam>	getParameters()
String	getSQL()
double	getThreshold()
boolean	isPrescreen()
void	setThreshold(double threshold)

Methods inherited from class ambit2.db.search.AbstractQuery

getCategory, getCondition, getFieldname, getId, getKey, getName, getPage, getPageSize, getValue, isSelected, setCondition, setFieldname, setId, setName, setPage, setPageSize, setSelected, setValue, stringify, supportsPaging, test, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.idea.modbcum.i.IQueryObject

getCategory, getId, getKey, getPage, getPageSize, setId, setPage, setPageSize, supportsPaging

Field Detail

relation

protected SimilarityRelation relation

threshold

protected double threshold

Constructor Detail

QueryPairwiseTanimoto

public QueryPairwiseTanimoto()

Method Detail

getThreshold

public double getThreshold()

setThreshold

public void setThreshold(double threshold)

getParameters

public List<net.idea.modbcum.i.query.QueryParam> getParameters()
                                                        throws net.idea.modbcum.i.exceptions.AmbitException

Specified by:

getParameters in interface net.idea.modbcum.i.IQueryObject<SimilarityRelation>

Throws:

net.idea.modbcum.i.exceptions.AmbitException

getSQL

public String getSQL()
              throws net.idea.modbcum.i.exceptions.AmbitException

Specified by:

getSQL in interface net.idea.modbcum.i.IQueryObject<SimilarityRelation>

Throws:

net.idea.modbcum.i.exceptions.AmbitException

getObject

public SimilarityRelation getObject(ResultSet rs)
                             throws net.idea.modbcum.i.exceptions.AmbitException

Specified by:

getObject in interface net.idea.modbcum.i.IRetrieval<SimilarityRelation>

Throws:

net.idea.modbcum.i.exceptions.AmbitException

isPrescreen

public boolean isPrescreen()

Specified by:

isPrescreen in interface net.idea.modbcum.i.IQueryRetrieval<SimilarityRelation>

calculateMetric

public double calculateMetric(SimilarityRelation object)

Specified by:

calculateMetric in interface net.idea.modbcum.i.IQueryRetrieval<SimilarityRelation>