AtomEnvironment (Ambit 2 4.0.1-SNAPSHOT API)

java.lang.Object
- ambit2.descriptors.AtomEnvironment

All Implemented Interfaces:

Serializable, Comparable<AtomEnvironment>
```
public class AtomEnvironment
extends Object
implements Comparable<AtomEnvironment>, Serializable
```
An atom environment. Used by ambit2.dbcli.descriptors.AtomEnvironmentGeneratorApp.structure.AtomEnvironmentGenerator and ambit2.database.writers.AtomEnvironmentWriter.

Author:

Nina Jeliazkova nina@acad.bg Modified Aug 31, 2006

See Also:

Serialized Form

Field Summary

Fields
Modifier and Type	Field and Description
`protected int[]`	`atom_environment`
`protected int`	`atomno`
`protected String`	`central_atom`
`protected int`	`frequency`
`protected int`	`levels`
`protected int`	`status`
`protected int`	`sublevel`
`protected long`	`time_elapsed`

Constructor Summary

Constructors
Constructor and Description
`AtomEnvironment()` 3-levels
`AtomEnvironment(int levels)`
`AtomEnvironment(int atomNo, String central_atom, int[] atom_environment, int levels, long time_elapsed, int status)`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`static String`	`atomFingerprintToString(int[] fpae, char delimiter)`
`int`	`compareTo(AtomEnvironment arg0)`
`boolean`	`equals(Object obj)`
`int[]`	`getAtom_environment()`
`int`	`getAtomno()`
`String`	`getCentral_atom()`
`int`	`getFrequency()`
`int[]`	`getLevel(int level)`
`String`	`getLevel2String(int level)`
`int`	`getLevels()`
`int`	`getStatus()`
`AtomEnvironment`	`getSubAtomEnvironment(int level)`
`int`	`getSublevel()`
`long`	`getTime_elapsed()`
`void`	`incFrequency()`
`void`	`setAtom_environment(int[] atom_environment)`
`void`	`setAtomno(int atomno)`
`void`	`setCentral_atom(String central_atom)`
`void`	`setFrequency(int frequency)`
`void`	`setStatus(int status)`
`void`	`setSublevel(int sublevel)`
`void`	`setTime_elapsed(long time_elapsed)`
`String`	`toString()`

Methods inherited from class java.lang.Object
clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

levels
```
protected int levels
```

atomno
```
protected int atomno
```

central_atom
```
protected String central_atom
```

atom_environment
```
protected int[] atom_environment
```

time_elapsed
```
protected long time_elapsed
```

status
```
protected int status
```

frequency
```
protected int frequency
```

sublevel
```
protected transient int sublevel
```

Constructor Detail

AtomEnvironment
```
public AtomEnvironment()
```
3-levels

AtomEnvironment
```
public AtomEnvironment(int levels)
```

AtomEnvironment

public AtomEnvironment(int atomNo,
                       String central_atom,
                       int[] atom_environment,
                       int levels,
                       long time_elapsed,
                       int status)

Method Detail

atomFingerprintToString

public static String atomFingerprintToString(int[] fpae,
                                             char delimiter)

getSubAtomEnvironment

public AtomEnvironment getSubAtomEnvironment(int level)

getLevel
```
public int[] getLevel(int level)
```

getLevel2String

public String getLevel2String(int level)

getAtom_environment
```
public int[] getAtom_environment()
```

setAtom_environment

public void setAtom_environment(int[] atom_environment)

getAtomno
```
public int getAtomno()
```

setAtomno
```
public void setAtomno(int atomno)
```

getCentral_atom
```
public String getCentral_atom()
```

setCentral_atom

public void setCentral_atom(String central_atom)

getFrequency
```
public int getFrequency()
```

setFrequency

public void setFrequency(int frequency)

incFrequency
```
public void incFrequency()
```

getStatus
```
public int getStatus()
```

setStatus
```
public void setStatus(int status)
```

getTime_elapsed
```
public long getTime_elapsed()
```

setTime_elapsed

public void setTime_elapsed(long time_elapsed)

toString
```
public String toString()
```
Overrides:

toString in class Object

compareTo
```
public int compareTo(AtomEnvironment arg0)
```
Specified by:

compareTo in interface Comparable<AtomEnvironment>

equals
```
public boolean equals(Object obj)
```
Overrides:

equals in class Object

getLevels
```
public int getLevels()
```

getSublevel
```
public int getSublevel()
```

setSublevel

public void setSublevel(int sublevel)

Class AtomEnvironment

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

levels

atomno

central_atom

atom_environment

time_elapsed

status

frequency

sublevel

Constructor Detail

AtomEnvironment

AtomEnvironment

AtomEnvironment

Method Detail

atomFingerprintToString

getSubAtomEnvironment

getLevel

getLevel2String

getAtom_environment

setAtom_environment

getAtomno

setAtomno

getCentral_atom

setCentral_atom

getFrequency

setFrequency

incFrequency

getStatus

setStatus

getTime_elapsed

setTime_elapsed

toString

compareTo

equals

getLevels

getSublevel

setSublevel