ambit2.export.isa.base

Class ISALocation

java.lang.Object

ambit2.export.isa.base.ISALocation

public class ISALocation
extends Object

Author:

nick ISA Location is specified as string notation using following syntax layer.[layer position].[layer position2].[process index/id].[element name[index]].[sub-element name[index]] [layer position2] is used for the definition of ISA location within assay Examples: investigation.description study.1.process[2] assay.0.0.process[2]

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	ISALocation.Layer

Field Summary

Fields

Modifier and Type	Field and Description
int	elementIndex
String	elementName
ISALocation.Layer	layer
String	layerPos2ID
int	layerPos2Index
String	layerPosID
int	layerPosIndex
String	processID
int	processIndex
static String	splitter
int	subElementIndex
String	subElementName

Constructor Summary

Constructors

Constructor and Description
ISALocation()

Method Summary

Modifier and Type	Method and Description
protected static void	parseElement(ISALocation isaLoc, String token)
protected static void	parseLayerPos(ISALocation isaLoc, String token)
protected static void	parseLayerPos2(ISALocation isaLoc, String token)
protected static int	parseProcess(ISALocation isaLoc, String token, boolean AllowMissingProcess)
static ISALocation	parseString(String isaLocString)
protected static void	parseSubElement(ISALocation isaLoc, String token)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

splitter

public static final String splitter

See Also:

Constant Field Values

layer

public ISALocation.Layer layer

layerPosIndex

public int layerPosIndex

layerPosID

public String layerPosID

layerPos2Index

public int layerPos2Index

layerPos2ID

public String layerPos2ID

processIndex

public int processIndex

processID

public String processID

elementName

public String elementName

elementIndex

public int elementIndex

subElementName

public String subElementName

subElementIndex

public int subElementIndex

Constructor Detail

ISALocation

public ISALocation()

Method Detail

parseString

public static ISALocation parseString(String isaLocString)
                               throws Exception

Throws:

Exception

parseLayerPos

protected static void parseLayerPos(ISALocation isaLoc,
                                    String token)
                             throws Exception

Throws:

Exception

parseLayerPos2

protected static void parseLayerPos2(ISALocation isaLoc,
                                     String token)
                              throws Exception

Throws:

Exception

parseProcess

protected static int parseProcess(ISALocation isaLoc,
                                  String token,
                                  boolean AllowMissingProcess)
                           throws Exception

Throws:

Exception

parseElement

protected static void parseElement(ISALocation isaLoc,
                                   String token)
                            throws Exception

Throws:

Exception

parseSubElement

protected static void parseSubElement(ISALocation isaLoc,
                                      String token)
                               throws Exception

Throws:

Exception

toString

public String toString()

Overrides:

toString in class Object