ambit2.export.isa.json

Class ISAJsonExportConfig

java.lang.Object

ambit2.export.isa.ISAExportConfig

ambit2.export.isa.json.ISAJsonExportConfig

public class ISAJsonExportConfig
extends ISAExportConfig

Field Summary

Fields

Modifier and Type	Field and Description
boolean	singleJSONFile

Fields inherited from class ambit2.export.isa.ISAExportConfig

bundleDescriptionLoc, bundleDescriptionLocString, bundleTitleLoc, bundleTitleLocString, dataFileFormat, effectRecordLoc, effectRecordLocString, extDataFileType, FlagAllCompositionInOneProcess, FlagDescriptionAdditiveContent, FlagExportContentAsConstituentCharacteristics, FlagExportFormulaAsConstituentCharacteristics, FlagExportInchiAsConstituentCharacteristics, FlagExportInchiKeyAsConstituentCharacteristics, FlagExportRelationAsConstituentCharacteristics, FlagExportSmilesAsConstituentCharacteristics, FlagExportStrucTypeAsConstituentCharacteristics, FlagSaveCompositionAsExtensionMaterial, FlagSaveCompositionAsStudy, FlagUseAbsolutePathForExternalDataFileLocation, FlagUseDeafultExtDataFileHeader, isaFormat, isaVersion, logger, protocolParamLoc, protocolParamLocString

Constructor Summary

Constructors

Constructor and Description
ISAJsonExportConfig()

Method Summary

Modifier and Type	Method and Description
static ISAJsonExportConfig	getDefaultConfig()
static ISAJsonExportConfig	loadFromJSON(File jsonConfig)
void	parseJSONConfig(com.fasterxml.jackson.databind.JsonNode rootNode)

Methods inherited from class ambit2.export.isa.ISAExportConfig

fillDefaultISAConfig, parseISALocations, parseISALocationString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

singleJSONFile

public boolean singleJSONFile

Constructor Detail

ISAJsonExportConfig

public ISAJsonExportConfig()

Method Detail

parseJSONConfig

public void parseJSONConfig(com.fasterxml.jackson.databind.JsonNode rootNode)
                     throws Exception

Overrides:

parseJSONConfig in class ISAExportConfig

Throws:

Exception

loadFromJSON

public static ISAJsonExportConfig loadFromJSON(File jsonConfig)
                                        throws Exception

Throws:

Exception

getDefaultConfig

public static ISAJsonExportConfig getDefaultConfig()