ambit2.groupcontribution.dataset

Class LocalPropertiesIterator

java.lang.Object

ambit2.groupcontribution.dataset.LocalPropertiesIterator

All Implemented Interfaces:

Iterator<LocalProperties>

public class LocalPropertiesIterator
extends Object
implements Iterator<LocalProperties>

Field Summary

Fields

Modifier and Type	Field and Description
protected int[]	atomColIndices
protected org.apache.commons.csv.CSVRecord	curCSVRecord
protected LocalProperties	curLocalProperties
protected String	curMolId
protected File	file
protected org.apache.commons.csv.CSVFormat	format
protected Iterator<org.apache.commons.csv.CSVRecord>	iterator
protected LocalProperties.Type	locPropType
protected int	molIdColIndex
protected int	numOfProperties
protected org.apache.commons.csv.CSVParser	parser
protected int[]	propertyColIndices
protected String[]	propertyNames

Constructor Summary

Constructors

Constructor and Description
LocalPropertiesIterator(File file)
LocalPropertiesIterator(File file, org.apache.commons.csv.CSVFormat format, LocalProperties.Type locPropType)
LocalPropertiesIterator(File file, LocalProperties.Type locPropType)

Method Summary

Modifier and Type	Method and Description
void	close()
LocalProperties.Type	getLocalPropertyType()
String[]	getPropertyNames()
boolean	hasNext()
protected void	init()
LocalProperties	next()
protected void	setDefaultColumnIndices()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Iterator

forEachRemaining, remove

Field Detail

file

protected File file

locPropType

protected LocalProperties.Type locPropType

parser

protected org.apache.commons.csv.CSVParser parser

iterator

protected Iterator<org.apache.commons.csv.CSVRecord> iterator

format

protected org.apache.commons.csv.CSVFormat format

curLocalProperties

protected LocalProperties curLocalProperties

curCSVRecord

protected org.apache.commons.csv.CSVRecord curCSVRecord

curMolId

protected String curMolId

propertyNames

protected String[] propertyNames

numOfProperties

protected int numOfProperties

molIdColIndex

protected int molIdColIndex

atomColIndices

protected int[] atomColIndices

propertyColIndices

protected int[] propertyColIndices

Constructor Detail

LocalPropertiesIterator

public LocalPropertiesIterator(File file)
                        throws Exception

Throws:

Exception

LocalPropertiesIterator

public LocalPropertiesIterator(File file,
                               LocalProperties.Type locPropType)
                        throws Exception

Throws:

Exception

LocalPropertiesIterator

public LocalPropertiesIterator(File file,
                               org.apache.commons.csv.CSVFormat format,
                               LocalProperties.Type locPropType)
                        throws Exception

Throws:

Exception

Method Detail

init

protected void init()
             throws Exception

Throws:

Exception

getPropertyNames

public String[] getPropertyNames()

getLocalPropertyType

public LocalProperties.Type getLocalPropertyType()

setDefaultColumnIndices

protected void setDefaultColumnIndices()

hasNext

public boolean hasNext()

Specified by:

hasNext in interface Iterator<LocalProperties>

next

public LocalProperties next()

Specified by:

next in interface Iterator<LocalProperties>

close

public void close()
           throws Exception

Throws:

Exception