DataCoverage (Ambit 2 4.0.1-SNAPSHOT API)

java.lang.Object
- ambit2.model.numeric.DataCoverage<DATA>

All Implemented Interfaces:

IDataCoverage<DATA>, Serializable

Direct Known Subclasses:

DataCoverageDescriptors, DataCoverageFingerprints, DataCoverageLeverage, DataCoverageLeverageHatMatrix
```
public abstract class DataCoverage<DATA>
extends Object
implements IDataCoverage<DATA>
```
A parent class to all classess that estimate and assess applicability domain

Author:

Nina Jeliazkova
Modified 2005-4-7

See Also:

Serialized Form

Field Summary

Fields
Modifier and Type	Field and Description
`protected ADomainMethodType`	`appDomainMethodType`
`protected static Logger`	`logger`
`protected Object`	`object`
`protected double`	`pThreshold`
`protected double`	`threshold`

Constructor Summary

Constructors
Constructor and Description

DataCoverage()

DataCoverage(ADomainMethodType mode)

Constructors
Constructor and Description
`DataCoverage()`
`DataCoverage(ADomainMethodType mode)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`clear()`
`Object`	`clone()`
`ADomainMethodType`	`getAppDomainMethodType()`
`int`	`getDomain(double coverage)`
`int[]`	`getDomain(double[] coverage)`
`String`	`getDomainName()`
`String`	`getId()`
`String`	`getMetricName()`
`String`	`getName()`
`Object`	`getPoints()`
`double`	`getPThreshold()`
`boolean`	`isEmpty()`
`void`	`setAppDomainMethodType(ADomainMethodType appDomainMethodType)`
`void`	`setDomainName(String domainName)`
`void`	`setMetricName(String metricName)`
`void`	`setMode(ADomainMethodType mode)`
`void`	`setParameters(Object points)`
`void`	`setPThreshold(double athreshold)` The percent of points in-domain from the training set [0 - 1] percent - 1 means 100% , all points in
`String`	`toString()`

Methods inherited from class java.lang.Object
equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ambit2.model.numeric.IDataCoverage
build, predict

- Field Detail
  - logger
```
protected static Logger logger
```
  - object
```
protected transient Object object
```
  - appDomainMethodType
```
protected ADomainMethodType appDomainMethodType
```
  - threshold
```
protected double threshold
```
  - pThreshold
```
protected double pThreshold
```
- Constructor Detail
  - DataCoverage
```
public DataCoverage()
```
  - DataCoverage
```
public DataCoverage(ADomainMethodType mode)
```
- Method Detail
  - getDomainName
```
public String getDomainName()
```
    Specified by:
    
    getDomainName in interface IDataCoverage<DATA>
  - setDomainName
```
public void setDomainName(String domainName)
```
  - getMetricName
```
public String getMetricName()
```
    Specified by:
    
    getMetricName in interface IDataCoverage<DATA>
  - setMetricName
```
public void setMetricName(String metricName)
```
  - getId
```
public String getId()
```
  - isEmpty
```
public boolean isEmpty()
```
    Specified by:
    
    isEmpty in interface IDataCoverage<DATA>
  - setMode
```
public void setMode(ADomainMethodType mode)
```
    Specified by:
    
    setMode in interface IDataCoverage<DATA>
    
    Parameters:
    
    mode - - as in ADomainMethodType _modeRANGE = 0, _modeLEVERAGE = 1; modeEUCLIDEAN = 2, _modeCITYBLOCK = 3, _modeMAHALANOBIS = 4, _modeDENSITY = 5;
  - clear
```
public void clear()
```
  - getPThreshold
```
public double getPThreshold()
```
    Specified by:
    
    getPThreshold in interface IDataCoverage<DATA>
  - setPThreshold
```
public void setPThreshold(double athreshold)
```
    Description copied from interface: IDataCoverage
    
    The percent of points in-domain from the training set [0 - 1]
    percent - 1 means 100% , all points in
    
    Specified by:
    
    setPThreshold in interface IDataCoverage<DATA>
  - getDomain
```
public int getDomain(double coverage)
```
    Specified by:
    
    getDomain in interface IDataCoverage<DATA>
  - getDomain
```
public int[] getDomain(double[] coverage)
```
    Specified by:
    
    getDomain in interface IDataCoverage<DATA>
  - getName
```
public String getName()
```
  - getAppDomainMethodType
```
public ADomainMethodType getAppDomainMethodType()
```
    Specified by:
    
    getAppDomainMethodType in interface IDataCoverage<DATA>
  - setAppDomainMethodType
```
public void setAppDomainMethodType(ADomainMethodType appDomainMethodType)
```
    Specified by:
    
    setAppDomainMethodType in interface IDataCoverage<DATA>
  - clone
```
public Object clone()
             throws CloneNotSupportedException
```
    Overrides:
    
    clone in class Object
    
    Throws:
    
    CloneNotSupportedException
  - toString
```
public String toString()
```
    Overrides:
    
    toString in class Object
  - getPoints
```
public Object getPoints()
```
  - setParameters
```
public void setParameters(Object points)
                   throws QSARModelException
```
    Throws:
    
    QSARModelException

Class DataCoverage<DATA>

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Methods inherited from interface ambit2.model.numeric.IDataCoverage

Field Detail

logger

object

appDomainMethodType

threshold

pThreshold

Constructor Detail

DataCoverage

DataCoverage

Method Detail

getDomainName

setDomainName

getMetricName

setMetricName

getId

isEmpty

setMode

clear

getPThreshold

setPThreshold

getDomain

getDomain

getName

getAppDomainMethodType

setAppDomainMethodType

clone

toString

getPoints

setParameters