ambit2.reactions.cli

Class AmbitSmirksCli

java.lang.Object

ambit2.reactions.cli.AmbitSmirksCli

public class AmbitSmirksCli
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
String	applyArg
String	inputArg
String	modeArg
String	smirksArg

Constructor Summary

Constructors

Constructor and Description
AmbitSmirksCli()

Method Summary

Modifier and Type	Method and Description
protected static org.apache.commons.cli.Options	createOptions()
static void	main(String[] args)
protected static void	printHelp(org.apache.commons.cli.Options options, String message)
int	run(String[] args)
protected int	runSmirks()
void	setOption(ambit2.reactions.cli.AmbitSmirksCli._option option, String argument)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

inputArg

public String inputArg

smirksArg

public String smirksArg

modeArg

public String modeArg

applyArg

public String applyArg

Constructor Detail

AmbitSmirksCli

public AmbitSmirksCli()

Method Detail

main

public static void main(String[] args)

createOptions

protected static org.apache.commons.cli.Options createOptions()

printHelp

protected static void printHelp(org.apache.commons.cli.Options options,
                                String message)

setOption

public void setOption(ambit2.reactions.cli.AmbitSmirksCli._option option,
                      String argument)
               throws Exception

Throws:

Exception

run

public int run(String[] args)

runSmirks

protected int runSmirks()
                 throws Exception

Throws:

Exception