ambit2.rest.legacy

Class OTDataset

java.lang.Object

ambit2.rest.legacy.OTObject

ambit2.rest.legacy.OTDataset

All Implemented Interfaces:

IOTDataset, IOTObject, IOTPageable<IOTDataset>, Serializable, Comparable<OTObject>

Deprecated.

@Deprecated
public class OTDataset
extends OTObject
implements IOTDataset

Implementation of OpenTox API ://opentox.org/dev/apis/api-1.1/dataset

Author:

nina

See Also:

Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
protected static class	OTDataset.dataset_size Deprecated.

Field Summary

Fields

Modifier and Type	Field and Description
protected OTDataset.dataset_size	isEmpty Deprecated.
protected String	license Deprecated.
protected String	seeAlso Deprecated.
protected String	source Deprecated.

Fields inherited from class ambit2.rest.legacy.OTObject

dataset_service, forbidden, form, name, pollInterval, pollTimeout, selected, service, uri

Constructor Summary

Constructors

Constructor and Description
OTDataset(org.restlet.data.Reference ref) Deprecated.
OTDataset(String ref) Deprecated.

Method Summary

Modifier and Type	Method and Description
OTDataset	addColumns(OTFeature feature) Deprecated.
OTDataset	addColumns(OTFeatures features) Deprecated. Add features to the dataset
OTDataset	copy() Deprecated. Copies the dataset and returns URI to a new dataset
static OTDataset	createDataset(File file, String mimeType, String dataset_service) Deprecated.
static OTDataset	createDataset(org.restlet.representation.Representation entity, String dataset_service) Deprecated.
static OTDataset	dataset(org.restlet.data.Reference datasetURI) Deprecated.
static OTDataset	dataset(String datasetURI) Deprecated.
OTDataset	filterByFeature(OTFeature feature, boolean withFeatures) Deprecated.
protected OTDataset	filterByFeatures(OTFeatures features, boolean withFeatures) Deprecated.
OTDataset	filteredSubsetWithFeatures(OTFeatures features) Deprecated. Return dataset entries (compounds), having values for specified features
OTDataset	filteredSubsetWithoutFeatures(OTFeatures features) Deprecated. Return dataset entries (comnpounds),not having values for specified features
OTDataset	getFeatures(OTFeatures features) Deprecated.
String	getLicense() Deprecated.
OTDataset	getPage(int page, int pageSize) Deprecated.
String	getSeeAlso() Deprecated.
String	getSource() Deprecated.
boolean	isEmpty() Deprecated. Tries to GET the URI and returns true if the dataset is empty, false otherwise.
boolean	isEmpty(boolean cachedResult) Deprecated.
OTDataset	put(OTDatasets datasets) Deprecated. sends PUT request , adding datasets to the current one
OTDataset	removeColumns() Deprecated.
OTFeatures	retrieveFeatures(OTFeatures features, String referer) Deprecated.
void	setLicense(String license) Deprecated.
void	setSeeAlso(String seeAlso) Deprecated.
void	setSource(String source) Deprecated.
OTDataset	withDatasetService(org.restlet.data.Reference uri) Deprecated.
OTDataset	withDatasetService(String uri) Deprecated.
OTDataset	withName(String name) Deprecated.

Methods inherited from class ambit2.rest.legacy.OTObject

compareTo, create, delete, equals, get, getDataset_service, getName, getPagedReference, getUri, isForbidden, isSelected, object, object, post, post, put, readTextLineAsName, send, send, setName, setSelected, toString, wait, withParams, withParams

Methods inherited from class java.lang.Object

clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ambit2.rest.legacy.IOTObject

get, getName, getUri, isForbidden, isSelected, setSelected

Field Detail

isEmpty

protected OTDataset.dataset_size isEmpty

Deprecated.

license

protected String license

Deprecated.

source

protected String source

Deprecated.

seeAlso

protected String seeAlso

Deprecated.

Constructor Detail

OTDataset

public OTDataset(org.restlet.data.Reference ref)

Deprecated.

OTDataset

public OTDataset(String ref)

Deprecated.

Method Detail

getLicense

public String getLicense()

Deprecated.

setLicense

public void setLicense(String license)

Deprecated.

getSource

public String getSource()

Deprecated.

setSource

public void setSource(String source)

Deprecated.

getSeeAlso

public String getSeeAlso()

Deprecated.

setSeeAlso

public void setSeeAlso(String seeAlso)

Deprecated.

dataset

public static OTDataset dataset(org.restlet.data.Reference datasetURI)
                         throws Exception

Deprecated.

Throws:

Exception

dataset

public static OTDataset dataset(String datasetURI)
                         throws Exception

Deprecated.

Throws:

Exception

createDataset

public static OTDataset createDataset(org.restlet.representation.Representation entity,
                                      String dataset_service)
                               throws org.restlet.resource.ResourceException

Deprecated.

Throws:

org.restlet.resource.ResourceException

createDataset

public static OTDataset createDataset(File file,
                                      String mimeType,
                                      String dataset_service)
                               throws org.restlet.resource.ResourceException

Deprecated.

Throws:

org.restlet.resource.ResourceException

copy

public OTDataset copy()
               throws Exception

Deprecated.

Description copied from interface: IOTDataset

Copies the dataset and returns URI to a new dataset

Specified by:

copy in interface IOTDataset

Returns:

Throws:

Exception

put

public OTDataset put(OTDatasets datasets)
              throws Exception

Deprecated.

sends PUT request , adding datasets to the current one

Specified by:

put in interface IOTDataset

Returns:

Throws:

Exception

withDatasetService

public OTDataset withDatasetService(org.restlet.data.Reference uri)
                             throws Exception

Deprecated.

Specified by:

withDatasetService in interface IOTDataset

Throws:

Exception

withDatasetService

public OTDataset withDatasetService(String uri)
                             throws Exception

Deprecated.

Throws:

Exception

filterByFeature

public OTDataset filterByFeature(OTFeature feature,
                                 boolean withFeatures)
                          throws Exception

Deprecated.

Throws:

Exception

filterByFeatures

protected OTDataset filterByFeatures(OTFeatures features,
                                     boolean withFeatures)
                              throws Exception

Deprecated.

Throws:

Exception

filteredSubsetWithoutFeatures

public OTDataset filteredSubsetWithoutFeatures(OTFeatures features)
                                        throws Exception

Deprecated.

Description copied from interface: IOTDataset

Return dataset entries (comnpounds),not having values for specified features

Specified by:

filteredSubsetWithoutFeatures in interface IOTDataset

Throws:

Exception

filteredSubsetWithFeatures

public OTDataset filteredSubsetWithFeatures(OTFeatures features)
                                     throws Exception

Deprecated.

Description copied from interface: IOTDataset

Return dataset entries (compounds), having values for specified features

Specified by:

filteredSubsetWithFeatures in interface IOTDataset

Returns:

Throws:

Exception

isEmpty

public boolean isEmpty()
                throws Exception

Deprecated.

Description copied from interface: IOTDataset

Tries to GET the URI and returns true if the dataset is empty, false otherwise.

Specified by:

isEmpty in interface IOTDataset

Returns:

true if the dataset is empty, false otherwise.

Throws:

Exception

isEmpty

public boolean isEmpty(boolean cachedResult)
                throws Exception

Deprecated.

Throws:

Exception

removeColumns

public OTDataset removeColumns()
                        throws Exception

Deprecated.

Throws:

Exception

addColumns

public OTDataset addColumns(OTFeatures features)
                     throws Exception

Deprecated.

Description copied from interface: IOTDataset

Add features to the dataset

Specified by:

addColumns in interface IOTDataset

Returns:

Throws:

Exception

addColumns

public OTDataset addColumns(OTFeature feature)
                     throws Exception

Deprecated.

Throws:

Exception

getPage

public OTDataset getPage(int page,
                         int pageSize)
                  throws Exception

Deprecated.

Specified by:

getPage in interface IOTObject

Specified by:

getPage in interface IOTPageable<IOTDataset>

Overrides:

getPage in class OTObject

Throws:

Exception

getFeatures

public OTDataset getFeatures(OTFeatures features)
                      throws Exception

Deprecated.

Specified by:

getFeatures in interface IOTDataset

Returns:

Throws:

Exception

retrieveFeatures

public OTFeatures retrieveFeatures(OTFeatures features,
                                   String referer)
                            throws Exception

Deprecated.

Throws:

Exception

withName

public OTDataset withName(String name)

Deprecated.

Specified by:

withName in interface IOTObject

Overrides:

withName in class OTObject