ambit2.rest.legacy

Class RDFAbstractFeatureIterator<PROPERTY>

java.lang.Object

ambit2.rest.rdf.sparql.RDFSparqlIterator<PROPERTY>

ambit2.rest.legacy.RDFAbstractFeatureIterator<PROPERTY>

Type Parameters:

PROPERTY -

All Implemented Interfaces:

Iterator<PROPERTY>

Deprecated.

@Deprecated
public abstract class RDFAbstractFeatureIterator<PROPERTY>
extends RDFSparqlIterator<PROPERTY>

Parses an OpenTox RDF via SPAQRL query and iterates over property instances. All compound properties are represented via ot:Feature class. An ot:Feature class can have name (dc:title); units (ot:units); source of origin (ot:hasSource) , which is either ot:Algorithm, ot:Model or ot:Dataset; owl:sameAs - specifies an URI of an individual from another ontology, which this property is considered equivalent with.

Author:

nina

Field Summary

Fields

Modifier and Type	Field and Description
protected org.restlet.routing.Template	featureTemplate Deprecated.
protected static String	sparql Deprecated.

Fields inherited from class ambit2.rest.rdf.sparql.RDFSparqlIterator

baseReference, jenaModel, nextRecord, nextRecordNode, qe, record, recordIDVar, recordNode, reference, referer, resultSet

Constructor Summary

Constructors

Constructor and Description
RDFAbstractFeatureIterator(InputStream in, org.restlet.data.MediaType mediaType) Deprecated.
RDFAbstractFeatureIterator(com.hp.hpl.jena.rdf.model.Model model) Deprecated.
RDFAbstractFeatureIterator(com.hp.hpl.jena.rdf.model.Model model, String sparql) Deprecated.
RDFAbstractFeatureIterator(org.restlet.data.Reference reference, org.restlet.data.MediaType mediaType, String referer) Deprecated.
RDFAbstractFeatureIterator(org.restlet.data.Reference reference, String referer) Deprecated.
RDFAbstractFeatureIterator(org.restlet.representation.Representation representation, org.restlet.data.MediaType mediaType) Deprecated.

Method Summary

Modifier and Type	Method and Description
protected abstract PROPERTY	newProperty(com.hp.hpl.jena.rdf.model.RDFNode node) Deprecated.
protected PROPERTY	parse(com.hp.hpl.jena.query.QuerySolution querySolution, PROPERTY record) Deprecated.
void	setBaseReference(org.restlet.data.Reference baseReference) Deprecated.
protected abstract void	setNameValuePairs(PROPERTY record, com.hp.hpl.jena.rdf.model.RDFNode node, String title, String units, com.hp.hpl.jena.rdf.model.RDFNode source, com.hp.hpl.jena.rdf.model.RDFNode sameAs) Deprecated.

Methods inherited from class ambit2.rest.rdf.sparql.RDFSparqlIterator

close, finalize, getBaseReference, getJenaModel, getRecordURI, hasNext, isSameRecord, next, remove

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Iterator

forEachRemaining

Field Detail

featureTemplate

protected org.restlet.routing.Template featureTemplate

Deprecated.

sparql

protected static final String sparql

Deprecated.

See Also:

Constant Field Values

Constructor Detail

RDFAbstractFeatureIterator

public RDFAbstractFeatureIterator(org.restlet.representation.Representation representation,
                                  org.restlet.data.MediaType mediaType)
                           throws org.restlet.resource.ResourceException

Deprecated.

Throws:

org.restlet.resource.ResourceException

RDFAbstractFeatureIterator

public RDFAbstractFeatureIterator(org.restlet.data.Reference reference,
                                  String referer)
                           throws org.restlet.resource.ResourceException,
                                  IOException,
                                  MalformedURLException

Deprecated.

Throws:

org.restlet.resource.ResourceException

IOException

MalformedURLException

RDFAbstractFeatureIterator

public RDFAbstractFeatureIterator(org.restlet.data.Reference reference,
                                  org.restlet.data.MediaType mediaType,
                                  String referer)
                           throws org.restlet.resource.ResourceException,
                                  IOException,
                                  MalformedURLException

Deprecated.

Throws:

org.restlet.resource.ResourceException

IOException

MalformedURLException

RDFAbstractFeatureIterator

public RDFAbstractFeatureIterator(InputStream in,
                                  org.restlet.data.MediaType mediaType)
                           throws org.restlet.resource.ResourceException

Deprecated.

Throws:

org.restlet.resource.ResourceException

RDFAbstractFeatureIterator

public RDFAbstractFeatureIterator(com.hp.hpl.jena.rdf.model.Model model,
                                  String sparql)
                           throws org.restlet.resource.ResourceException

Deprecated.

Throws:

org.restlet.resource.ResourceException

RDFAbstractFeatureIterator

public RDFAbstractFeatureIterator(com.hp.hpl.jena.rdf.model.Model model)
                           throws org.restlet.resource.ResourceException

Deprecated.

Throws:

org.restlet.resource.ResourceException

Method Detail

setBaseReference

public void setBaseReference(org.restlet.data.Reference baseReference)

Deprecated.

Overrides:

setBaseReference in class RDFSparqlIterator<PROPERTY>

newProperty

protected abstract PROPERTY newProperty(com.hp.hpl.jena.rdf.model.RDFNode node)

Deprecated.

Parameters:

node -

Returns:

new PROPERTY instance

parse

protected PROPERTY parse(com.hp.hpl.jena.query.QuerySolution querySolution,
                         PROPERTY record)

Deprecated.

Specified by:

parse in class RDFSparqlIterator<PROPERTY>

setNameValuePairs

protected abstract void setNameValuePairs(PROPERTY record,
                                          com.hp.hpl.jena.rdf.model.RDFNode node,
                                          String title,
                                          String units,
                                          com.hp.hpl.jena.rdf.model.RDFNode source,
                                          com.hp.hpl.jena.rdf.model.RDFNode sameAs)

Deprecated.

Parameters:

record -

title -

units -

source - URI resource of the algorithm or model, generating the property or URI to the dataset or a bibliographic reference the property originates.

sameAs - URI of an individual in an ontology, owl:sameAs this property e.g. if BlueObelisk cheminformatics algorithm ontology or ECHA endpoints ontology, or an individual from another OWL *