ambit2.smarts.query

Class AbstractSmartsPattern<T>

java.lang.Object

ambit2.smarts.query.AbstractSmartsPattern<T>

All Implemented Interfaces:

ISmartsPattern<T>, Serializable

Direct Known Subclasses:

FastSmartsMatcher, SmartsPatternAmbit, SmartsPatternCDK

public abstract class AbstractSmartsPattern<T>
extends Object
implements Serializable, ISmartsPattern<T>

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected String	hint
protected static Logger	logger
protected String	name
protected boolean	negate
protected String	smarts

Constructor Summary

Constructors

Constructor and Description
AbstractSmartsPattern()

Method Summary

Modifier and Type	Method and Description
boolean	equals(Object obj)
String	getHint()
String	getName()
String	getSmarts()
List	getUniqueMatchingAtoms() Just for backward compatibility
boolean	isNegate()
int	match(org.openscience.cdk.interfaces.IAtomContainer mol)
void	setHint(String hint)
void	setName(String name)
void	setNegate(boolean negate)
void	setSmarts(String smarts)
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ambit2.smarts.query.ISmartsPattern

getMatchingStructure, getObjectToVerify, getQuery, hasSMARTSPattern, useMOEvPrimitive

Field Detail

logger

protected static Logger logger

negate

protected boolean negate

smarts

protected String smarts

name

protected String name

hint

protected String hint

Constructor Detail

AbstractSmartsPattern

public AbstractSmartsPattern()

Method Detail

getHint

public String getHint()

Specified by:

getHint in interface ISmartsPattern<T>

setHint

public void setHint(String hint)

Specified by:

setHint in interface ISmartsPattern<T>

getName

public String getName()

Specified by:

getName in interface ISmartsPattern<T>

setName

public void setName(String name)

Specified by:

setName in interface ISmartsPattern<T>

isNegate

public boolean isNegate()

Specified by:

isNegate in interface ISmartsPattern<T>

setNegate

public void setNegate(boolean negate)

Specified by:

setNegate in interface ISmartsPattern<T>

toString

public String toString()

Overrides:

toString in class Object

match

public int match(org.openscience.cdk.interfaces.IAtomContainer mol)
          throws SMARTSException

Specified by:

match in interface ISmartsPattern<T>

Throws:

SMARTSException

getSmarts

public String getSmarts()

Specified by:

getSmarts in interface ISmartsPattern<T>

setSmarts

public void setSmarts(String smarts)
               throws SMARTSException

Specified by:

setSmarts in interface ISmartsPattern<T>

Throws:

SMARTSException

equals

public boolean equals(Object obj)

Overrides:

equals in class Object

getUniqueMatchingAtoms

public List getUniqueMatchingAtoms()
                            throws SMARTSException

Description copied from interface: ISmartsPattern

Just for backward compatibility

Specified by:

getUniqueMatchingAtoms in interface ISmartsPattern<T>

Returns:

Throws:

SMARTSException