ambit2.some

Class SOMEVisualizer

java.lang.Object

ambit2.some.SOMEResultsParser

ambit2.some.SOMEVisualizer

All Implemented Interfaces:

IStructureDiagramDepiction<BufferedImage>, IStructureDiagramHighlights, IAtomContainerHighlights, Serializable, net.idea.modbcum.i.processors.IProcessor<org.openscience.cdk.interfaces.IAtomContainer,org.openscience.cdk.renderer.selection.IChemObjectSelection>

public class SOMEVisualizer
extends SOMEResultsParser
implements IStructureDiagramHighlights, IAtomContainerHighlights

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected Dimension	imageSize
protected org.openscience.cdk.interfaces.IAtomContainer	mol
protected String	ruleid
protected org.openscience.cdk.interfaces.IAtomContainer	selected

Constructor Summary

Constructors

Constructor and Description
SOMEVisualizer()

Method Summary

Modifier and Type	Method and Description
void	close()
long	getID()
BufferedImage	getImage(org.openscience.cdk.interfaces.IAtomContainer mol)
BufferedImage	getImage(org.openscience.cdk.interfaces.IAtomContainer mol, String ruleID, int width, int height, boolean atomnumbers)
Dimension	getImageSize()
BufferedImage	getLegend(int width, int height)
boolean	isEnabled()
void	open()
void	parseRecord(String some)
org.openscience.cdk.renderer.selection.IChemObjectSelection	process(org.openscience.cdk.interfaces.IAtomContainer mol)
protected void	process(int atomNum, String atomSymbol, SOMERawReader.someindex index, double value, boolean star)
void	setEnabled(boolean value)
void	setImageSize(Dimension imageSize)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

selected

protected org.openscience.cdk.interfaces.IAtomContainer selected

imageSize

protected Dimension imageSize

ruleid

protected String ruleid

mol

protected org.openscience.cdk.interfaces.IAtomContainer mol

Constructor Detail

SOMEVisualizer

public SOMEVisualizer()

Method Detail

getImage

public BufferedImage getImage(org.openscience.cdk.interfaces.IAtomContainer mol,
                              String ruleID,
                              int width,
                              int height,
                              boolean atomnumbers)
                       throws net.idea.modbcum.i.exceptions.AmbitException

Specified by:

getImage in interface IStructureDiagramDepiction<BufferedImage>

Throws:

net.idea.modbcum.i.exceptions.AmbitException

getImage

public BufferedImage getImage(org.openscience.cdk.interfaces.IAtomContainer mol)
                       throws net.idea.modbcum.i.exceptions.AmbitException

Specified by:

getImage in interface IStructureDiagramDepiction<BufferedImage>

Throws:

net.idea.modbcum.i.exceptions.AmbitException

parseRecord

public void parseRecord(String some)
                 throws Exception

Overrides:

parseRecord in class SOMEResultsParser

Throws:

Exception

process

protected void process(int atomNum,
                       String atomSymbol,
                       SOMERawReader.someindex index,
                       double value,
                       boolean star)

Overrides:

process in class SOMEResultsParser

getImageSize

public Dimension getImageSize()

Specified by:

getImageSize in interface IStructureDiagramDepiction<BufferedImage>

setImageSize

public void setImageSize(Dimension imageSize)

Specified by:

setImageSize in interface IStructureDiagramDepiction<BufferedImage>

getID

public long getID()

Specified by:

getID in interface net.idea.modbcum.i.processors.IProcessor<org.openscience.cdk.interfaces.IAtomContainer,org.openscience.cdk.renderer.selection.IChemObjectSelection>

isEnabled

public boolean isEnabled()

Specified by:

isEnabled in interface net.idea.modbcum.i.processors.IProcessor<org.openscience.cdk.interfaces.IAtomContainer,org.openscience.cdk.renderer.selection.IChemObjectSelection>

process

public org.openscience.cdk.renderer.selection.IChemObjectSelection process(org.openscience.cdk.interfaces.IAtomContainer mol)
                                                                    throws net.idea.modbcum.i.exceptions.AmbitException

Specified by:

process in interface net.idea.modbcum.i.processors.IProcessor<org.openscience.cdk.interfaces.IAtomContainer,org.openscience.cdk.renderer.selection.IChemObjectSelection>

Throws:

net.idea.modbcum.i.exceptions.AmbitException

setEnabled

public void setEnabled(boolean value)

Specified by:

setEnabled in interface net.idea.modbcum.i.processors.IProcessor<org.openscience.cdk.interfaces.IAtomContainer,org.openscience.cdk.renderer.selection.IChemObjectSelection>

getLegend

public BufferedImage getLegend(int width,
                               int height)
                        throws net.idea.modbcum.i.exceptions.AmbitException

Specified by:

getLegend in interface IStructureDiagramDepiction<BufferedImage>

Throws:

net.idea.modbcum.i.exceptions.AmbitException

close

public void close()
           throws Exception

Specified by:

close in interface net.idea.modbcum.i.processors.IProcessor<org.openscience.cdk.interfaces.IAtomContainer,org.openscience.cdk.renderer.selection.IChemObjectSelection>

Throws:

Exception

open

public void open()
          throws Exception

Specified by:

open in interface net.idea.modbcum.i.processors.IProcessor<org.openscience.cdk.interfaces.IAtomContainer,org.openscience.cdk.renderer.selection.IChemObjectSelection>

Throws:

Exception