ambit2.structure2name.components

Class ComponentUtils

java.lang.Object

ambit2.structure2name.components.ComponentUtils

public class ComponentUtils
extends Object

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	ComponentUtils.Comparison

Constructor Summary

Constructors

Constructor and Description
ComponentUtils()

Method Summary

Modifier and Type	Method and Description
static org.openscience.cdk.interfaces.IAtomContainer	generateContainerForAtomList(List<org.openscience.cdk.interfaces.IAtom> atoms, org.openscience.cdk.interfaces.IAtomContainer mol)
static String	getAtomListAsString(List<org.openscience.cdk.interfaces.IAtom> atoms, org.openscience.cdk.interfaces.IAtomContainer mol)
static String	getComponentString(List<org.openscience.cdk.interfaces.IAtom> atoms, org.openscience.cdk.interfaces.IAtomContainer mol)
static List<ComponentConnection>	getConnections(List<ComponentConnection> conn, double rankThreshold, ComponentUtils.Comparison compasion)
static ComponentConnection[]	sortConnectionsByRank(List<ComponentConnection> conn)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ComponentUtils

public ComponentUtils()

Method Detail

getConnections

public static List<ComponentConnection> getConnections(List<ComponentConnection> conn,
                                                       double rankThreshold,
                                                       ComponentUtils.Comparison compasion)

sortConnectionsByRank

public static ComponentConnection[] sortConnectionsByRank(List<ComponentConnection> conn)

generateContainerForAtomList

public static org.openscience.cdk.interfaces.IAtomContainer generateContainerForAtomList(List<org.openscience.cdk.interfaces.IAtom> atoms,
                                                                                         org.openscience.cdk.interfaces.IAtomContainer mol)

getAtomListAsString

public static String getAtomListAsString(List<org.openscience.cdk.interfaces.IAtom> atoms,
                                         org.openscience.cdk.interfaces.IAtomContainer mol)

getComponentString

public static String getComponentString(List<org.openscience.cdk.interfaces.IAtom> atoms,
                                        org.openscience.cdk.interfaces.IAtomContainer mol)