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java.lang.Object ambit2.base.external.CommandShell<INPUT,org.openscience.cdk.interfaces.IMolecule> ambit2.core.external.ShellSDFoutput<INPUT>
public abstract class ShellSDFoutput<INPUT>
Field Summary | |
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protected boolean |
readOutput
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Fields inherited from class ambit2.base.external.CommandShell |
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enabled, executables, exitCode, inputFile, logger, os_LINUX, os_MAC, os_WINDOWS, os_WINDOWSVISTA, outputFile, prefix, runAsync |
Constructor Summary | |
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ShellSDFoutput()
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Method Summary | |
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protected void |
initialize()
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boolean |
isReadOutput()
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protected org.openscience.cdk.interfaces.IMolecule |
parseOutput(java.lang.String path,
INPUT mol)
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void |
setReadOutput(boolean readOutput)
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Methods inherited from class ambit2.base.external.CommandShell |
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addExecutable, addExecutable, addExecutableLinux, addExecutableMac, addExecutableWin, exitCodeOK, getExecutable, getExecutable, getExitCode, getID, getInputFile, getOutputFile, getPath, isEnabled, prepareInput, process, runShell, runShell, setEnabled, setExitCode, setInputFile, setOutputFile, transform_input, transform, transform |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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protected boolean readOutput
Constructor Detail |
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public ShellSDFoutput() throws ambit2.base.external.ShellException
ambit2.base.external.ShellException
Method Detail |
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protected void initialize() throws ambit2.base.external.ShellException
initialize
in class ambit2.base.external.CommandShell<INPUT,org.openscience.cdk.interfaces.IMolecule>
ambit2.base.external.ShellException
protected org.openscience.cdk.interfaces.IMolecule parseOutput(java.lang.String path, INPUT mol) throws ambit2.base.external.ShellException
parseOutput
in class ambit2.base.external.CommandShell<INPUT,org.openscience.cdk.interfaces.IMolecule>
ambit2.base.external.ShellException
public boolean isReadOutput()
public void setReadOutput(boolean readOutput)
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