ambit2.core.io
Class RawIteratingWrapper<R extends org.openscience.cdk.io.iterator.IIteratingChemObjectReader>

java.lang.Object
  ambit2.core.io.RawIteratingWrapper<R>

All Implemented Interfaces:

IRawReader<ambit2.base.interfaces.IStructureRecord>, java.util.Iterator, org.openscience.cdk.io.IChemObjectIO, org.openscience.cdk.io.iterator.IIteratingChemObjectReader

public class RawIteratingWrapper<R extends org.openscience.cdk.io.iterator.IIteratingChemObjectReader>
extends java.lang.Object
implements IRawReader<ambit2.base.interfaces.IStructureRecord>

Field Summary

protected ambit2.base.data.StructureRecord	r
protected R	reader
protected ambit2.base.data.LiteratureEntry	reference
protected MoleculeWriter	writer

Constructor Summary

RawIteratingWrapper(R reader)

Method Summary

boolean	accepts(java.lang.Class arg0)
void	addChemObjectIOListener(org.openscience.cdk.io.listener.IChemObjectIOListener arg0)
void	close()
org.openscience.cdk.io.formats.IResourceFormat	getFormat()
org.openscience.cdk.io.setting.IOSetting[]	getIOSettings()
ambit2.base.data.LiteratureEntry	getReference()
boolean	hasNext()
java.lang.Object	next()
ambit2.base.interfaces.IStructureRecord	nextRecord()
void	remove()
void	removeChemObjectIOListener(org.openscience.cdk.io.listener.IChemObjectIOListener arg0)
void	setReference(ambit2.base.data.LiteratureEntry reference)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

reader

protected R extends org.openscience.cdk.io.iterator.IIteratingChemObjectReader reader

writer

protected MoleculeWriter writer

reference

protected ambit2.base.data.LiteratureEntry reference

r

protected final ambit2.base.data.StructureRecord r

Constructor Detail

RawIteratingWrapper

public RawIteratingWrapper(R reader)

Method Detail

getReference

public ambit2.base.data.LiteratureEntry getReference()

setReference

public void setReference(ambit2.base.data.LiteratureEntry reference)

nextRecord

public ambit2.base.interfaces.IStructureRecord nextRecord()

Specified by:

nextRecord in interface IRawReader<ambit2.base.interfaces.IStructureRecord>

accepts

public boolean accepts(java.lang.Class arg0)

Specified by:

accepts in interface org.openscience.cdk.io.IChemObjectIO

addChemObjectIOListener

public void addChemObjectIOListener(org.openscience.cdk.io.listener.IChemObjectIOListener arg0)

Specified by:

addChemObjectIOListener in interface org.openscience.cdk.io.IChemObjectIO

close

public void close()
           throws java.io.IOException

Specified by:

close in interface org.openscience.cdk.io.IChemObjectIO

Throws:

java.io.IOException

getFormat

public org.openscience.cdk.io.formats.IResourceFormat getFormat()

Specified by:

getFormat in interface org.openscience.cdk.io.IChemObjectIO

getIOSettings

public org.openscience.cdk.io.setting.IOSetting[] getIOSettings()

Specified by:

getIOSettings in interface org.openscience.cdk.io.IChemObjectIO

removeChemObjectIOListener

public void removeChemObjectIOListener(org.openscience.cdk.io.listener.IChemObjectIOListener arg0)

Specified by:

removeChemObjectIOListener in interface org.openscience.cdk.io.IChemObjectIO

hasNext

public boolean hasNext()

Specified by:

hasNext in interface java.util.Iterator

next

public java.lang.Object next()

Specified by:

next in interface java.util.Iterator

remove

public void remove()

Specified by:

remove in interface java.util.Iterator