ambit2.core.processors.structure
Class AbstractPropertyGenerator<P>

java.lang.Object
  ambit2.base.processors.DefaultAmbitProcessor<ambit2.base.interfaces.IStructureRecord,ambit2.base.interfaces.IStructureRecord>
      ambit2.core.processors.structure.AbstractPropertyGenerator<P>

All Implemented Interfaces:

ambit2.base.interfaces.IProcessor<ambit2.base.interfaces.IStructureRecord,ambit2.base.interfaces.IStructureRecord>, java.io.Serializable

public abstract class AbstractPropertyGenerator<P>
extends ambit2.base.processors.DefaultAmbitProcessor<ambit2.base.interfaces.IStructureRecord,ambit2.base.interfaces.IStructureRecord>

Transforms IStructureRecord into IAtomContainer , calculates some property and assigns it to IStructureRecord

See Also:

Serialized Form

Field Summary

protected MoleculeReader

reader

Fields inherited from class ambit2.base.processors.DefaultAmbitProcessor

enabled, logger, propertyChangeSupport

Constructor Summary

AbstractPropertyGenerator()

Method Summary

protected abstract P	generateProperty(org.openscience.cdk.interfaces.IAtomContainer atomContainer)
protected org.openscience.cdk.interfaces.IAtomContainer	getAtomContainer(ambit2.base.interfaces.IStructureRecord target)
protected abstract ambit2.base.data.Property	getProperty()
protected abstract ambit2.base.data.Property	getTimeProperty()
ambit2.base.interfaces.IStructureRecord	process(ambit2.base.interfaces.IStructureRecord target)

Methods inherited from class ambit2.base.processors.DefaultAmbitProcessor

addPropertyChangeListener, addPropertyChangeListener, getID, isEnabled, removePropertyChangeListener, removePropertyChangeListener, setEnabled, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

reader

protected MoleculeReader reader

Constructor Detail

AbstractPropertyGenerator

public AbstractPropertyGenerator()

Method Detail

process

public ambit2.base.interfaces.IStructureRecord process(ambit2.base.interfaces.IStructureRecord target)
                                                throws ambit2.base.exceptions.AmbitException

Throws:

ambit2.base.exceptions.AmbitException

getProperty

protected abstract ambit2.base.data.Property getProperty()

getTimeProperty

protected abstract ambit2.base.data.Property getTimeProperty()

generateProperty

protected abstract P generateProperty(org.openscience.cdk.interfaces.IAtomContainer atomContainer)
                               throws ambit2.base.exceptions.AmbitException

Throws:

ambit2.base.exceptions.AmbitException

getAtomContainer

protected org.openscience.cdk.interfaces.IAtomContainer getAtomContainer(ambit2.base.interfaces.IStructureRecord target)
                                                                  throws ambit2.base.exceptions.AmbitException

Throws:

ambit2.base.exceptions.AmbitException