ambit2.core.processors.structure
Class HydrogenAdderProcessor

java.lang.Object
  ambit2.base.processors.DefaultAmbitProcessor<org.openscience.cdk.interfaces.IAtomContainer,org.openscience.cdk.interfaces.IAtomContainer>
      ambit2.core.processors.structure.AtomConfigurator
          ambit2.core.processors.structure.HydrogenAdderProcessor

All Implemented Interfaces:

ambit2.base.interfaces.IProcessor<org.openscience.cdk.interfaces.IAtomContainer,org.openscience.cdk.interfaces.IAtomContainer>, java.io.Serializable

public class HydrogenAdderProcessor
extends AtomConfigurator

See Also:

Serialized Form

Field Summary

protected boolean	addEexplicitHydrogens
protected org.openscience.cdk.tools.CDKHydrogenAdder	adder

Fields inherited from class ambit2.core.processors.structure.AtomConfigurator

elements

Fields inherited from class ambit2.base.processors.DefaultAmbitProcessor

enabled, logger, propertyChangeSupport

Constructor Summary

HydrogenAdderProcessor()

Method Summary

boolean	isAddEexplicitHydrogens()
org.openscience.cdk.interfaces.IAtomContainer	process(org.openscience.cdk.interfaces.IAtomContainer mol)
void	setAddEexplicitHydrogens(boolean addEexplicitHydrogens)

Methods inherited from class ambit2.core.processors.structure.AtomConfigurator

getElements

Methods inherited from class ambit2.base.processors.DefaultAmbitProcessor

addPropertyChangeListener, addPropertyChangeListener, getID, isEnabled, removePropertyChangeListener, removePropertyChangeListener, setEnabled, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

adder

protected org.openscience.cdk.tools.CDKHydrogenAdder adder

addEexplicitHydrogens

protected boolean addEexplicitHydrogens

Constructor Detail

HydrogenAdderProcessor

public HydrogenAdderProcessor()

Method Detail

isAddEexplicitHydrogens

public boolean isAddEexplicitHydrogens()

setAddEexplicitHydrogens

public void setAddEexplicitHydrogens(boolean addEexplicitHydrogens)

process

public org.openscience.cdk.interfaces.IAtomContainer process(org.openscience.cdk.interfaces.IAtomContainer mol)
                                                      throws ambit2.base.exceptions.AmbitException

Specified by:

process in interface ambit2.base.interfaces.IProcessor<org.openscience.cdk.interfaces.IAtomContainer,org.openscience.cdk.interfaces.IAtomContainer>

Overrides:

process in class AtomConfigurator

Throws:

ambit2.base.exceptions.AmbitException