Constant Field Values

Contents

• ambit2.core.*

ambit2.core.*

ambit2.core.config.AmbitCONSTANTS

public static final java.lang.String	AESimilarity	"Atom environment similarity"
public static final java.lang.String	AMBIT_IDSTRUCTURE	"AMBIT_ID"
public static final java.lang.String	AMBIT_IDSUBSTANCE	"AMBIT_IDSUBSTANCE"
public static final java.lang.String	AQUIRE	"AQUIRE"
public static final java.lang.String	AtomEnvironment	"ambit2.data.molecule.AtomEnvironmentDescriptor"
public static final java.lang.String	CASRN	"CasRN"
public static final java.lang.String	DATASET	"SOURCE"
public static final java.lang.String	EXPERIMENT	"EXPERIMENT"
public static final java.lang.String	EXPERIMENT_LIST	"EXPERIMENT_LIST"
public static final java.lang.String	Fingerprint	"org.openscience.cdk.fingerprint.Fingerprinter"
public static final java.lang.String	FingerprintSTATUS	"FP_STATUS"
public static final java.lang.String	FingerprintTIME	"FP_TIME"
public static final java.lang.String	FORMULA	"FORMULA"
public static final java.lang.String	INCHI	"INChI"
public static final int	maxCyclicBonds	37
public static final int	maxHAtoms	70
public static final int	maxHeavyAtoms	70
public static final java.lang.String	MOLWEIGHT	"MolWeigth"
public static final java.lang.String	NAMES	"Names"
public static final java.lang.String	PairwiseSimilarity	"PairwiseSimilarity"
public static final java.lang.String	PREDICTED	"PREDICTED"
public static final java.lang.String	QSARPOINT	"QSARPOINT"
public static final java.lang.String	SMARTSQuery	"SMARTSQuery"
public static final java.lang.String	SMILES	"SMILES"
public static final java.lang.String	StructuralKey	"ambit2.smarts.SmartsScreeningKeys.key"
public static final java.lang.String	StructuralKey_STATUS	"ambit2.smarts.SmartsScreeningKeys.status"
public static final java.lang.String	StructuralKey_TIME	"ambit2.smarts.SmartsScreeningKeys.time"
public static final java.lang.String	STRUCTURETYPE	"STRUCTURE_TYPE"
public static final java.lang.String	SUBSTANCETYPE	"SUBSTANCE_TYPE"
public static final java.lang.String	Tanimoto	"Tanimoto"
public static final java.lang.String	UNIQUE_SMILES	"USMILES"
public static final java.lang.String	UNIQUE_SMILES_TIME	"USMILESTIME"
public static final java.lang.String	version	" v2.0 "

ambit2.core.config.Resources

public static final java.lang.String	DEFAULT_DIR	"DEFAULT_DIR"
public static final java.lang.String	err_invalidcas	"err_invalidcas"
public static final java.lang.String	GENERATE2D	"GENERATE2D"
public static final java.lang.String	MSG_EMPTYFILE	"MSG_EMPTYFILE"
public static final java.lang.String	MSG_ERRORONOPEN	"MSG_ERRORONOPEN"
public static final java.lang.String	MSG_ERRORONSAVE	"MSG_ERRORONSAVE"
public static final java.lang.String	msg_exit	"msg_exit"
public static final java.lang.String	msg_notallowed	"msg_notallowed"
public static final java.lang.String	MSG_OPENSUCCESS	"MSG_OPENSUCCESS"
public static final java.lang.String	MSG_SAVESUCCESS	"MSG_SAVESUCCESS"
public static final java.lang.String	MSG_UNSUPPORTEDFORMAT	"MSG_UNSUPPORTEDFORMAT"
public static final java.lang.String	SHOW_AROMATICITY	"SHOW_AROMATICITY"
public static final java.lang.String	SMARTS_UNDEFINED	"SMARTS_UNDEFINED"
public static final java.lang.String	SMILESPARSER	"SMILESPARSER"

ambit2.core.data.MoleculeTools

public static final int	_FPLength	1024
public static final int	substTypeInorganic	2
public static final int	substTypeMetallic	4
public static final int	substTypeMixture	3
public static final int	substTypeOrganic	1

ambit2.core.data.experiment.DefaultTemplate

public static final java.lang.String	duration	"Duration"
public static final java.lang.String	endpoint	"Endpoint"
public static final java.lang.String	result	"Result"
public static final java.lang.String	species	"Species"
public static final java.lang.String	species_sex	"Species.sex"
public static final java.lang.String	species_strain	"Species.strain"
public static final java.lang.String	units	"Units"

ambit2.core.groups.ComponentGroup

protected static final java.lang.String

mainsubscript

"c"

ambit2.core.groups.ISGroup

public static final java.lang.String	SGROUP_CONNECTIVITY	"ambit2.groups.ISGroup.SGROUP_CONNECTIVITY"
public static final java.lang.String	SGROUP_VISIBLE	"ambit2.groups.ISGroup.visible"

ambit2.core.io.FileInputState

public static final transient int	CML_INDEX	7
public static final transient int	CSV_INDEX	1
public static final transient int	EURAS_INDEX	11
public static final transient int	HIN_INDEX	8
public static final transient int	ICHI_INDEX	5
public static final transient int	INCHI_INDEX	6
public static final transient int	MOL_INDEX	4
public static final transient int	PDB_INDEX	9
public static final transient int	SDF_INDEX	0
public static final transient int	SMI_INDEX	2
public static final transient int	TXT_INDEX	3
public static final transient int	XLS_INDEX	10

ambit2.core.io.FileOutputState

public static final transient int	CML_INDEX	4
public static final transient int	CSV_INDEX	1
public static final transient int	HIN_INDEX	6
public static final transient int	HTML_INDEX	10
public static final transient int	JPG_INDEX	13
public static final transient int	MOL_INDEX	5
public static final transient int	PDB_INDEX	7
public static final transient int	PDF_INDEX	11
public static final transient int	PNG_INDEX	14
public static final transient int	RTF_INDEX	15
public static final transient int	SDF_INDEX	0
public static final transient int	SMI_INDEX	2
public static final transient int	SVG_INDEX	12
public static final transient int	TXT_INDEX	3
public static final transient int	XLS_INDEX	9
public static final transient int	XYZ_INDEX	8

ambit2.core.io.RawIteratingSDFReader

public static final java.lang.String

delimiter

"$$$$"