How to cite AMBIT

Kochev, N., I. Tsakovska, and N. Jeliazkova, "Cheminformatics representation of chemical structures - a milestone for successful big data modelling", in Big Data in Predictive Toxicology, RSC, 2017. (in print)
J. Sun, N. Jeliazkova, V. Chupakin, J.-F. Golib-Dzib, O. Engkvist, L. Carlsson, J. Wegner, H. Ceulemans, I. Georgiev, V. Jeliazkov, N. Kochev, T. J. Ashby, and H. Chen, "ExCAPE-DB: an integrated large scale dataset facilitating Big Data analysis in chemogenomics", J. Cheminform., vol. 9, no. 1, p. 17, Mar. 2017. 10.1186/s13321-017-0203-5
N. Jeliazkova, V. Koch, Q. Li, U. Jensch, J. S. Reigl, R. Kreiling, I. Georgiev, and B. Hubesch, Linking LRI AMBIT chemoinformatic system with the IUCLID substance database to support read-across of substance endpoint data and category formation, Toxicol. Lett., vol. 258, pp. S114–S115, Sep. 2016. 10.1016/j.toxlet.2016.06.1469
N. Jeliazkova, C. Chomenidis, P. Doganis, B. Fadeel, R. Grafström, B. Hardy, J. Hastings, M. Hegi, V. Jeliazkov, N. Kochev, P. Kohonen, C. R. Munteanu, H. Sarimveis, B. Smeets, P. Sopasakis, G. Tsiliki, D. Vorgrimmler, and E. Willighagen, "The eNanoMapper database for nanomaterial safety information", Beilstein J. Nanotechnol., vol. 6, pp. 1609-1634, Jul. 2015 doi:10.3762/bjnano.6.165.
N. Jeliazkova, P. Doganis, B. Fadeel, R. Grafstrom, J. Hastings, V. Jeliazkov, P. Kohonen, C. R. Munteanu, H. Sarimveis, B. Smeets, G. Tsiliki, D. Vorgrimmler, and E. Willighagen, "The first eNanoMapper prototype: A substance database to support safe-by-design", in 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2014, pp. 1–9.. doi:10.1109/BIBM.2014.6999367
Kochev N., Paskaleva V., Jeliazkova N., Ambit-Tautomer: An Open Source Tool for Tautomer Generation, Molecular Informatics, 2013, 32(5-6):481-504. doi:10.1002/minf.201200133
Jeliazkova, N., Jeliazkov V., Chemical Landscape Analysis with the Opentox Framework, Current Topics in Medicinal Chemistry, 2012, 12(18);1987-2001(15).
Jeliazkova N., Jeliazkov V. AMBIT RESTful web services: an implementation of the OpenTox application programming interface, Journal of Cheminformatics 2011, 3:18, doi:10.1186/1758-2946-3-18.
Jeliazkova N., Kochev N. Ambit-SMARTS: Efficient Searching Of Chemical Structures And Fragments, Molecular Informatics, 2011;30(8):707-720. doi:10.1002/minf.201100028
Jeliazkova N., Jaworska J., Worth A. Chapter 17. Open Source Tools for Read-Across and Category Formation, In M. Cronin, & Madden J. (Eds.), In Silico Toxicology : Principles and Applications (pp. 408-445). Cambridge, UK: RSC Publishing ,2010
Joanna Jaworska, Nina Nikolova-Jeliazkova, How can structural similarity analysis help in category formation, SAR and QSAR in Environmental Research, vol 18, 3-4 (2007)

Presentations, Posters

EEM9.3: Linking LRI AMBIT Chemoinformatic system with the IUCLID Substance database to Support Read-across of Substance endpoint data and Category formation, presented by Dr. Volker Koch, Clariant, DE, 17th Annual CEFIC LRI Workshop, Brussels, BE, 18-19 Nov 2015
Q. Li, V. Koch, U. Jensch, J. Schneider-Reigl, N. Jeliazkova, B. Hubesch, and R. Kreiling, "Development of the Clariant CompTox Suite: A chemoinformatic system to support read-across and category formation within the scope of safety assessments of substances," Toxicol. Lett., vol. 238, no. 2, pp. S172–S173, Oct. 2015. doi:10.1016/j.toxlet.2015.08.584
Nikolay Kochev, Roland Grafstrom, How to store nanomaterial safety data : meet eNanoMapper database, poster at International Congress on Safety of Engineered Nanoparticles and Nanotechnologies SENN2015, Helsinki, Finland, 12-15 April 2015
Nina Jeliazkova, Kochev N., Jeliazkov V., Chemical landscape analysis - the case of tautomers, poster at 6th Joint Sheffield Conference on Chemoinformatics, Sheffield, UK, July 2013
N.Kochev, V.Paskaleva, N. Jeliazkova, Algorithms for Automatic Tautomer Generation and Their Applications, poster at 6th Joint Sheffield Conference on Chemoinformatics, Sheffield, UK, July 2013

Web sites

AMBIT site: http://ambit.sourceforge.net
AMBIT Web services: https://apps.ideaconsult.net/data
AMBIT Web services: https://apps.ideaconsult.net/ambit2
LRI AMBIT Read across tool: https://ambitlri.ideaconsult.net
ExCAPE-DB
eNanoMapper database
NANoREG - eNanoMapper

Publications

Presentations, Posters

Web sites