Property (Ambit 2 4.0.1-SNAPSHOT API)

java.lang.Object
- ambit2.base.data.Property

All Implemented Interfaces:

Serializable, Comparable<Property>

Direct Known Subclasses:

Dictionary, NameOnlyProperty, SubstanceName, SubstanceOwner, SubstanceProperty, SubstancePublicName, SubstanceUUID
```
public class Property
extends Object
implements Serializable, Comparable<Property>
```
See Also:

Serialized Form

Nested Class Summary

Nested Classes
Modifier and Type Class and Description

static class Property.IO_QUESTION

Nested Classes
Modifier and Type	Class and Description
`static class`	`Property.IO_QUESTION`

Field Summary

Fields
Modifier and Type	Field and Description
`protected List<Comparable>`	`allowedValues`
`static String`	`AMBIT_DESCRIPTORS_ONTOLOGY`
`protected PropertyAnnotations`	`annotations`
`static String`	`CAS`
`protected Class`	`clazz`
`static String`	`EC`
`protected boolean`	`enabled`
`protected int`	`id`
`protected boolean`	`isNominal`
`static String`	`IUCLID5_UUID`
`protected String`	`label`
`static String`	`link_WikiPathway`
`protected String`	`name`
`static String`	`Names`
`static String`	`opentox_CAS`
`static String`	`opentox_ChEBI`
`static String`	`opentox_ChEMBL`
`static String`	`opentox_ChemSpider`
`static String`	`opentox_CMS`
`static String`	`opentox_ConfidenceFeature`
`static String`	`opentox_DrugBank`
`static String`	`opentox_EC`
`static String`	`opentox_InChI`
`static String`	`opentox_InChI_std`
`static String`	`opentox_InChIAuxInfo`
`static String`	`opentox_InChIAuxInfo_std`
`static String`	`opentox_InChIKey`
`static String`	`opentox_InChIKey_std`
`static String`	`opentox_IUCLID5_UUID`
`static String`	`opentox_IupacName`
`static String`	`opentox_KEGG`
`static String`	`opentox_LS`
`static String`	`opentox_Name`
`static String`	`opentox_Pubchem`
`static String`	`opentox_REACHDATE`
`static String`	`opentox_SigmaAldrich`
`static String`	`opentox_SMILES`
`static String`	`opentox_SubstanceDataSource`
`static String`	`opentox_ToxbankWiki`
`static String`	`opentox_TradeName`
`static String`	`opentox_TupleFeature`
`protected int`	`order`
`protected ILiteratureEntry`	`reference`
`protected String`	`units`

Constructor Summary

Constructors
Constructor and Description
`Property(String name)`
`Property(String name, ILiteratureEntry reference)`
`Property(String name, String units, ILiteratureEntry reference)`
`Property(String name, String label, String units)`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`addAllowedValue(Comparable value)`
`void`	`assign(Property newProperty)`
`int`	`compareTo(Property o)`
`boolean`	`equals(Object obj)`
`List<Comparable>`	`getAllowedValues()`
`PropertyAnnotations`	`getAnnotations()`
`static Property`	`getCASInstance()`
`Class`	`getClazz()`
`static Property`	`getEINECSInstance()`
`static Property`	`getI5UUIDInstance()`
`int`	`getId()`
`static Property`	`getInChIInstance()`
`static Property`	`getInChIKeyInstance()`
`static Property`	`getInChIStdInstance()`
`static Property`	`getInstance(String name, ILiteratureEntry reference)`
`static Property`	`getInstance(String name, String reference)`
`static Property`	`getInstance(String name, String reference, String url)`
`String`	`getLabel()`
`String`	`getName()`
`static Property`	`getNameInstance()`
`int`	`getOrder()`
`ILiteratureEntry`	`getReference()`
`String`	`getRelativeURI()`
`static Property`	`getSMILESInstance()`
`String`	`getTitle()`
`static Property`	`getTradeNameInstance(String synonym)`
`String`	`getUnits()`
`String`	`getUrl()`
`static String`	`guessLabel(String n)` public constructors for web services
`int`	`hashCode()`
`boolean`	`isCAS()`
`boolean`	`isEINECS()`
`boolean`	`isEnabled()`
`boolean`	`isI5UUID()`
`boolean`	`isName()`
`boolean`	`isNominal()`
`boolean`	`save(OutputStream out)`
`boolean`	`save(Writer writer)`
`void`	`setAllowedValues(List<Comparable> allowedValues)`
`void`	`setAnnotations(PropertyAnnotations annotations)`
`void`	`setClazz(Class clazz)`
`void`	`setEnabled(boolean enabled)`
`void`	`setId(int id)`
`void`	`setLabel(String label)`
`void`	`setName(String name)`
`void`	`setNominal(boolean isNominal)`
`void`	`setOrder(int order)`
`void`	`setReference(ILiteratureEntry reference)`
`void`	`setUnits(String units)`
`static boolean`	`test4CAS(String n)`
`String`	`toString()`

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

AMBIT_DESCRIPTORS_ONTOLOGY

public static String AMBIT_DESCRIPTORS_ONTOLOGY

Names
```
public static final String Names
```
See Also:

Constant Field Values

CAS
```
public static final String CAS
```
See Also:

Constant Field Values

IUCLID5_UUID

public static final String IUCLID5_UUID

See Also:: Constant Field Values

opentox_REACHDATE

public static final String opentox_REACHDATE

See Also:: Constant Field Values

opentox_CAS
```
public static final String opentox_CAS
```
See Also:

Constant Field Values

opentox_Name

public static final String opentox_Name

See Also:: Constant Field Values

opentox_TradeName

public static final String opentox_TradeName

See Also:: Constant Field Values

opentox_SubstanceDataSource

public static final String opentox_SubstanceDataSource

See Also:: Constant Field Values

opentox_IupacName

public static final String opentox_IupacName

See Also:: Constant Field Values

opentox_EC
```
public static final String opentox_EC
```
See Also:

Constant Field Values

opentox_InChI_std

public static final String opentox_InChI_std

See Also:: Constant Field Values

opentox_InChIAuxInfo_std

public static final String opentox_InChIAuxInfo_std

See Also:: Constant Field Values

opentox_InChIKey_std

public static final String opentox_InChIKey_std

See Also:: Constant Field Values

opentox_IUCLID5_UUID

public static final String opentox_IUCLID5_UUID

See Also:: Constant Field Values

opentox_InChI

public static final String opentox_InChI

See Also:: Constant Field Values

opentox_InChIAuxInfo

public static final String opentox_InChIAuxInfo

See Also:: Constant Field Values

opentox_InChIKey

public static final String opentox_InChIKey

See Also:: Constant Field Values

opentox_SMILES

public static final String opentox_SMILES

See Also:: Constant Field Values

opentox_TupleFeature

public static final String opentox_TupleFeature

See Also:: Constant Field Values

opentox_ConfidenceFeature

public static final String opentox_ConfidenceFeature

See Also:: Constant Field Values

opentox_ChEBI

public static final String opentox_ChEBI

See Also:: Constant Field Values

opentox_Pubchem

public static final String opentox_Pubchem

See Also:: Constant Field Values

opentox_ChemSpider

public static final String opentox_ChemSpider

See Also:: Constant Field Values

opentox_DrugBank

public static final String opentox_DrugBank

See Also:: Constant Field Values

opentox_KEGG

public static final String opentox_KEGG

See Also:: Constant Field Values

opentox_LS
```
public static final String opentox_LS
```
See Also:

Constant Field Values

opentox_SigmaAldrich

public static final String opentox_SigmaAldrich

See Also:: Constant Field Values

opentox_ChEMBL

public static final String opentox_ChEMBL

See Also:: Constant Field Values

opentox_ToxbankWiki

public static final String opentox_ToxbankWiki

See Also:: Constant Field Values

opentox_CMS
```
public static final String opentox_CMS
```
See Also:

Constant Field Values

link_WikiPathway

public static final String link_WikiPathway

See Also:: Constant Field Values

EC
```
public static final String EC
```
See Also:

Constant Field Values

annotations

protected PropertyAnnotations annotations

isNominal
```
protected boolean isNominal
```

name
```
protected String name
```

label
```
protected String label
```

units
```
protected String units
```

id
```
protected int id
```

order
```
protected int order
```

clazz
```
protected Class clazz
```

enabled
```
protected boolean enabled
```

reference
```
protected ILiteratureEntry reference
```

allowedValues

protected List<Comparable> allowedValues

Constructor Detail

Property
```
public Property(String name)
```

Property

public Property(String name,
                ILiteratureEntry reference)

Property

public Property(String name,
                String units,
                ILiteratureEntry reference)

Property

public Property(String name,
                String label,
                String units)

Method Detail

setName
```
public void setName(String name)
```

getAnnotations

public PropertyAnnotations getAnnotations()

setAnnotations

public void setAnnotations(PropertyAnnotations annotations)

isNominal
```
public boolean isNominal()
```

setNominal

public void setNominal(boolean isNominal)

getNameInstance

public static Property getNameInstance()

getTradeNameInstance

public static Property getTradeNameInstance(String synonym)

getI5UUIDInstance

public static Property getI5UUIDInstance()

getCASInstance

public static Property getCASInstance()

getEINECSInstance

public static Property getEINECSInstance()

getInstance

public static Property getInstance(String name,
                                   String reference)

getSMILESInstance

public static Property getSMILESInstance()

getInChIInstance

public static Property getInChIInstance()

getInChIKeyInstance

public static Property getInChIKeyInstance()

getInChIStdInstance

public static Property getInChIStdInstance()

getInstance

public static Property getInstance(String name,
                                   ILiteratureEntry reference)

getInstance

public static Property getInstance(String name,
                                   String reference,
                                   String url)

getAllowedValues

public List<Comparable> getAllowedValues()

setAllowedValues

public void setAllowedValues(List<Comparable> allowedValues)

getId
```
public int getId()
```

addAllowedValue

public void addAllowedValue(Comparable value)

setId
```
public void setId(int id)
```

getUnits
```
public String getUnits()
```

setUnits
```
public void setUnits(String units)
```

getReference

public ILiteratureEntry getReference()

setReference

public void setReference(ILiteratureEntry reference)

test4CAS

public static boolean test4CAS(String n)

guessLabel
```
public static String guessLabel(String n)
```
public constructors for web services

Parameters:

name -

hashCode
```
public int hashCode()
```
Overrides:

hashCode in class Object

getClazz
```
public Class getClazz()
```

setClazz
```
public void setClazz(Class clazz)
```

getLabel
```
public String getLabel()
```

setLabel
```
public void setLabel(String label)
```

getName
```
public String getName()
```

getTitle
```
public String getTitle()
```

getUrl
```
public String getUrl()
```

getOrder
```
public int getOrder()
```

setOrder
```
public void setOrder(int order)
```

isEnabled
```
public boolean isEnabled()
```

setEnabled

public void setEnabled(boolean enabled)

toString
```
public String toString()
```
Overrides:

toString in class Object

save

public boolean save(OutputStream out)
             throws AmbitIOException

Throws:: AmbitIOException

save

public boolean save(Writer writer)
             throws AmbitIOException

Throws:: AmbitIOException

equals
```
public boolean equals(Object obj)
```
Overrides:

equals in class Object

compareTo
```
public int compareTo(Property o)
```
Specified by:

compareTo in interface Comparable<Property>

assign

public void assign(Property newProperty)

isCAS
```
public boolean isCAS()
```

isName
```
public boolean isName()
```

isEINECS
```
public boolean isEINECS()
```

isI5UUID
```
public boolean isI5UUID()
```

getRelativeURI
```
public String getRelativeURI()
```

Class Property

Nested Class Summary

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

AMBIT_DESCRIPTORS_ONTOLOGY

Names

CAS

IUCLID5_UUID

opentox_REACHDATE

opentox_CAS

opentox_Name

opentox_TradeName

opentox_SubstanceDataSource

opentox_IupacName

opentox_EC

opentox_InChI_std

opentox_InChIAuxInfo_std

opentox_InChIKey_std

opentox_IUCLID5_UUID

opentox_InChI

opentox_InChIAuxInfo

opentox_InChIKey

opentox_SMILES

opentox_TupleFeature

opentox_ConfidenceFeature

opentox_ChEBI

opentox_Pubchem

opentox_ChemSpider

opentox_DrugBank

opentox_KEGG

opentox_LS

opentox_SigmaAldrich

opentox_ChEMBL

opentox_ToxbankWiki

opentox_CMS

link_WikiPathway

EC

annotations

isNominal

name

label

units

id

order

clazz

enabled

reference

allowedValues

Constructor Detail

Property

Property

Property

Property

Method Detail

setName

getAnnotations

setAnnotations

isNominal

setNominal

getNameInstance

getTradeNameInstance

getI5UUIDInstance

getCASInstance

getEINECSInstance

getInstance

getSMILESInstance

getInChIInstance

getInChIKeyInstance

getInChIStdInstance

getInstance

getInstance

getAllowedValues

setAllowedValues

getId

addAllowedValue

setId

getUnits