Uses of Class
ambit2.base.data.Property

Packages that use Property

Package	Description
ambit2.base.data	Base data structures; no chemistry.
ambit2.base.data.substance	Chemical substances, with complex composition (including nanomaterials)
ambit2.base.interfaces	Format independent IO utilities
ambit2.base.processors.search
ambit2.base.relation.composition	Classes to describe chemical composition
ambit2.chebi
ambit2.core.data
ambit2.core.io	Input output support.
ambit2.core.io.dx
ambit2.core.io.study
ambit2.core.processors.structure
ambit2.core.processors.structure.key
ambit2.db.chart
ambit2.db.facets.propertyvalue
ambit2.db.processors
ambit2.db.processors.quality
ambit2.db.readers
ambit2.db.reporters
ambit2.db.results
ambit2.db.search.property
ambit2.db.search.structure
ambit2.db.simiparity.space
ambit2.db.substance.study
ambit2.db.update.bundle.endpoints
ambit2.db.update.dataset
ambit2.db.update.dictionary
ambit2.db.update.fpae
ambit2.db.update.property
ambit2.db.update.qlabel
ambit2.db.update.qlabel.smarts
ambit2.db.update.structure
ambit2.dbui
ambit2.dbui.dictionary
ambit2.descriptors.processors
ambit2.pubchem.rest
ambit2.rest.dataset
ambit2.rest.model.builder
ambit2.rest.model.predictor
ambit2.rest.property
ambit2.rest.rdf
ambit2.rest.rdf.sparql
ambit2.smarts.processors
ambit2.tautomers.processor
ambit2.ui
ambit2.ui.editors
ambit2.ui.table
ambit2.vega

Uses of Property in ambit2.base.data

Classes in ambit2.base.data with type parameters of type Property

Modifier and Type	Class and Description
class	Profile<P extends Property> A set of properties, defining a (e.g.

Subclasses of Property in ambit2.base.data

Modifier and Type	Class and Description
class	Dictionary encapsulates pseudo ontology , defined in template and dictionary tables

Fields in ambit2.base.data declared as Property

Modifier and Type	Field and Description
protected Property	PropertyTemplateStats.property

Fields in ambit2.base.data with type parameters of type Property

Modifier and Type	Field and Description
protected TypedListModel<Property>	ProfileListModel.fields
protected Map<Property,Object>	StructureRecord.properties
protected List<Property>	PropertiesTableModel.visibleFields

Methods in ambit2.base.data that return Property

Modifier and Type	Method and Description
protected Property	ProfileListModel.addElement(Property p, Boolean visibility)
static Property	Property.getCASInstance()
static Property	ChEMBLProperties.getChEMBL_Activity_Instance(String assay)
static Property	ChEMBLProperties.getChEMBL_CompoundURI_Instance()
static Property	ChEMBLProperties.getChEMBL_Name_Instance()
static Property	ChEMBLProperties.getChEMBL_Smiles_Instance()
static Property	ChEMBLProperties.getChEMBLPropertyInstance(String property, ChEMBLProperties.ChEMBL_Class clazz)
static Property	Property.getEINECSInstance()
Property	ProfileListModel.getElementAt(int index)
static Property	Property.getI5UUIDInstance()
static Property	Property.getInChIInstance()
static Property	Property.getInChIKeyInstance()
static Property	Property.getInChIStdInstance()
static Property	Property.getInstance(String name, ILiteratureEntry reference)
static Property	Property.getInstance(String name, String reference)
static Property	Property.getInstance(String name, String reference, String url)
static Property	Property.getNameInstance()
Property	ChEMBLProperties.ChEMBL_Property.getProperty()
Property	PropertyTemplateStats.getProperty()
Property	ChEMBLProperties.ChEMBL_Property.getProperty(String uri)
static Property	Property.getSMILESInstance()
static Property	Property.getTradeNameInstance(String synonym)

Methods in ambit2.base.data that return types with arguments of type Property

Modifier and Type	Method and Description
protected Map<Property,Object>	StructureRecord.createProperties()
Map<Property,Object>	StructureRecord.getMap()
Iterable<Property>	StructureRecord.getRecordProperties()

Methods in ambit2.base.data with parameters of type Property

Modifier and Type	Method and Description
protected Property	ProfileListModel.addElement(Property p, Boolean visibility)
void	Property.assign(Property newProperty)
int	Property.compareTo(Property o)
Object	StructureRecord.getRecordProperty(Property key)
Object	StructureRecord.removeRecordProperty(Property key)
void	PropertyTemplateStats.setProperty(Property property)
void	StructureRecord.setRecordProperty(Property key, Object value)

Method parameters in ambit2.base.data with type arguments of type Property

Modifier and Type	Method and Description
void	PropertiesTableModel.setFields(TypedListModel<Property> fields)

Constructors in ambit2.base.data with parameters of type Property

Constructor and Description
PropertyTemplateStats(Property p, String template, long count)

Constructor parameters in ambit2.base.data with type arguments of type Property

Constructor and Description
ProfileListModel(Hashtable<String,Profile<Property>> profiles, Boolean visibility)
ProfileListModel(Profile<Property> profile)
ProfileListModel(Profile<Property> profile, Boolean visibility)
ProfileListModel(TypedListModel<Property> fields)
ProfileListModel(TypedListModel<Property> fields, Boolean visibility)
PropertiesTableModel(TypedListModel<Property> fields, boolean visibility, int columns)

Uses of Property in ambit2.base.data.substance

Subclasses of Property in ambit2.base.data.substance

Modifier and Type	Class and Description
class	SubstanceName
class	SubstanceOwner
class	SubstanceProperty
class	SubstancePropertyCategory
class	SubstancePublicName
class	SubstanceUUID

Uses of Property in ambit2.base.interfaces

Methods in ambit2.base.interfaces that return types with arguments of type Property

Modifier and Type	Method and Description
Iterable<Property>	IStructureRecord.getRecordProperties()

Methods in ambit2.base.interfaces with parameters of type Property

Modifier and Type	Method and Description
Object	IStructureRecord.getRecordProperty(Property key)
Object	IStructureRecord.removeRecordProperty(Property key)
void	IStructureRecord.setRecordProperty(Property key, Object value)

Uses of Property in ambit2.base.processors.search

Methods in ambit2.base.processors.search with parameters of type Property

Modifier and Type	Method and Description
protected Object	AbstractFinder.retrieveValue(IStructureRecord target, Property key)

Uses of Property in ambit2.base.relation.composition

Methods in ambit2.base.relation.composition that return types with arguments of type Property

Modifier and Type	Method and Description
Iterable<Property>	CompositionRelation.getRecordProperties()

Methods in ambit2.base.relation.composition with parameters of type Property

Modifier and Type	Method and Description
Object	CompositionRelation.getRecordProperty(Property key)
Object	CompositionRelation.removeRecordProperty(Property key)
void	CompositionRelation.setRecordProperty(Property key, Object value)

Uses of Property in ambit2.chebi

Methods in ambit2.chebi that return Property

Modifier and Type	Method and Description
static Property	ChEBIClient.getChebiProperty(String name, String alias)

Uses of Property in ambit2.core.data

Methods in ambit2.core.data that return types with arguments of type Property

Modifier and Type	Method and Description
List<Property>	IObject2Properties.process(D target)

Uses of Property in ambit2.core.io

Fields in ambit2.core.io declared as Property

Modifier and Type	Field and Description
protected Property	ECHAPreregistrationListReader.casProperty
static Property	I5ReaderSimple.casProperty
protected Property	RawIteratingFolderReader.casProperty
protected Property	ECHAPreregistrationListReader.ecProperty
static Property	I5ReaderSimple.ecProperty
protected Property	RawIteratingFolderReader.einecsProperty
protected Property	ToXMLReaderSimple.inchiProperty
protected Property	ECHAPreregistrationListReader.nameProperty
static Property	I5ReaderSimple.nameProperty
protected Property	RawIteratingFolderReader.nameProperty
protected Property	ECHAPreregistrationListReader.registrationProperty
protected Property	I5ReaderSimple.registrationProperty

Fields in ambit2.core.io with type parameters of type Property

Modifier and Type	Field and Description
protected List<Property>	MolPropertiesIOSetting.properties
protected Stack<Property>	ToXMLReaderSimple.properties

Methods in ambit2.core.io that return Property

Modifier and Type	Method and Description
protected Property	IteratingXLSReader.createPropertyByColumnName(String name)

Methods in ambit2.core.io that return types with arguments of type Property

Modifier and Type	Method and Description
protected ArrayList<Property>	IteratingXLSReader.createHeader()

Methods in ambit2.core.io with parameters of type Property

Modifier and Type	Method and Description
protected void	ToXMLReaderSimple.setProperty(Property key, Object value)

Uses of Property in ambit2.core.io.dx

Methods in ambit2.core.io.dx that return Property

Modifier and Type	Method and Description
protected Property	DXParser.verifyDXProperty(Property property, Object value, ILiteratureEntry reference)

Methods in ambit2.core.io.dx with parameters of type Property

Modifier and Type	Method and Description
protected Property	DXParser.verifyDXProperty(Property property, Object value, ILiteratureEntry reference)
int	DXParser.verifySuperEndpoints(IStructureRecord record, Property p)

Uses of Property in ambit2.core.io.study

Methods in ambit2.core.io.study with parameters of type Property

Modifier and Type	Method and Description
static void	ProtocolEffectRecord2SubstanceProperty.addValues(SubstanceRecord master, Property key, Value value, Object oldValue)

Uses of Property in ambit2.core.processors.structure

Fields in ambit2.core.processors.structure declared as Property

Modifier and Type	Field and Description
protected Property	MoleculePairProcessor.smartsProperty

Methods in ambit2.core.processors.structure that return Property

Modifier and Type	Method and Description
protected abstract Property	AbstractPropertyGenerator.getProperty()
protected abstract Property	AbstractPropertyGenerator.getTimeProperty()

Uses of Property in ambit2.core.processors.structure.key

Subclasses of Property in ambit2.core.processors.structure.key

Modifier and Type	Class and Description
class	NameOnlyProperty

Fields in ambit2.core.processors.structure.key declared as Property

Modifier and Type	Field and Description
protected Property	CASKey.key
protected Property	PropertyKey.key

Methods in ambit2.core.processors.structure.key with parameters of type Property

Modifier and Type	Method and Description
boolean	CASKey.isKeyValid(Property key)
boolean	EINECSKey.isKeyValid(Property key)
boolean	NameKey.isKeyValid(Property newkey)
boolean	NoneKey.isKeyValid(Property key)
boolean	PropertyKey.isKeyValid(Property key)
boolean	ReferenceSubstanceUUID.isKeyValid(Property key)
boolean	SampleKey.isKeyValid(Property newkey)
void	PropertyKey.setKey(Property key)

Constructors in ambit2.core.processors.structure.key with parameters of type Property

Constructor and Description
DSSToxID(Property key)
PropertyKey(Property key)

Uses of Property in ambit2.db.chart

Fields in ambit2.db.chart declared as Property

Modifier and Type	Field and Description
protected Property	Nominal2SimilarityChartGenerator.property
protected Property	Numeric2SimilarityChartGenerator.property
protected Property	PieChartGenerator.property
protected Property	BarChartGenerator.propertyX
protected Property	PropertiesChartGenerator.propertyX
protected Property	XTabChartGenerator.propertyX
protected Property	BarChartGenerator.propertyY
protected Property	PropertiesChartGenerator.propertyY
protected Property	XTabChartGenerator.propertyY

Methods in ambit2.db.chart that return Property

Modifier and Type	Method and Description
Property	Nominal2SimilarityChartGenerator.getProperty()
Property	Numeric2SimilarityChartGenerator.getProperty()
Property	PieChartGenerator.getProperty()
Property	BarChartGenerator.getPropertyX()
Property	PropertiesChartGenerator.getPropertyX()
Property	XTabChartGenerator.getPropertyX()
Property	BarChartGenerator.getPropertyY()
Property	PropertiesChartGenerator.getPropertyY()
Property	XTabChartGenerator.getPropertyY()

Methods in ambit2.db.chart with parameters of type Property

Modifier and Type	Method and Description
void	Nominal2SimilarityChartGenerator.setProperty(Property property)
void	Numeric2SimilarityChartGenerator.setProperty(Property property)
void	PieChartGenerator.setProperty(Property property)
void	BarChartGenerator.setPropertyX(Property propertyX)
void	PropertiesChartGenerator.setPropertyX(Property propertyX)
void	XTabChartGenerator.setPropertyX(Property propertyX)
void	BarChartGenerator.setPropertyY(Property propertyY)
void	PropertiesChartGenerator.setPropertyY(Property propertyY)
void	XTabChartGenerator.setPropertyY(Property propertyY)

Uses of Property in ambit2.db.facets.propertyvalue

Fields in ambit2.db.facets.propertyvalue with type parameters of type Property

Modifier and Type	Field and Description
protected PropertyDatasetFacet<Property,SourceDataset>	PropertyDatasetFacetQuery.record

Methods in ambit2.db.facets.propertyvalue that return types with arguments of type Property

Modifier and Type	Method and Description
protected PropertyDatasetFacet<Property,SourceDataset>	PropertyDatasetFacetQuery.createFacet(String facetURL)
PropertyDatasetFacet<Property,SourceDataset>	PropertyDatasetFacetQuery.getObject(ResultSet rs)

Method parameters in ambit2.db.facets.propertyvalue with type arguments of type Property

Modifier and Type	Method and Description
double	PropertyDatasetFacetQuery.calculateMetric(PropertyDatasetFacet<Property,SourceDataset> object)

Uses of Property in ambit2.db.processors

Fields in ambit2.db.processors with type parameters of type Property

Modifier and Type	Field and Description
protected Profile<Property>	AbstractDescriptorCalculator.descriptors

Methods in ambit2.db.processors that return types with arguments of type Property

Modifier and Type	Method and Description
Profile<Property>	AbstractDescriptorCalculator.getDescriptors()
protected Iterable<Property>	DbDescriptorValuesWriter.getPropertyNames(org.openscience.cdk.qsar.DescriptorValue descriptor)
protected Iterable<Property>	DbDescriptorWriter.getPropertyNames(org.openscience.cdk.qsar.DescriptorValue value)
protected Iterable<Property>	PropertyValuesWriter.getPropertyNames(IStructureRecord record)
protected abstract Iterable<Property>	AbstractPropertyWriter.getPropertyNames(Target target)

Methods in ambit2.db.processors with parameters of type Property

Modifier and Type	Method and Description
protected Dictionary	ProcessorOntology.createProperty(Property property, ProcessorOntology.SIDE side)
protected QueryField	QueryInfo2Query.createQueryField(Property field, String value, String condition)
protected Dictionary	ProcessorOntology.deleteProperty(Property property, ProcessorOntology.SIDE side)
protected void	DbDescriptorWriter.descriptorEntry(org.openscience.cdk.qsar.DescriptorValue target, Property property, int propertyIndex, int idtuple)
protected abstract void	AbstractPropertyWriter.descriptorEntry(Target target, Property property, int propertyIndex, int idtuple)
protected void	ValueWriter.descriptorEntry(Target target, Property property, int propertyIndex, int idtuple)
protected Object	DbDescriptorValuesWriter.getValue(org.openscience.cdk.qsar.DescriptorValue descriptor, Property property, int propertyIndex)
protected Object	PropertyValuesWriter.getValue(IStructureRecord record, Property property, int index)
protected abstract Object	ValueWriter.getValue(Target target, Property propertyName, int index)
protected boolean	DbDescriptorValuesWriter.insertValue(double value, Property property, int idtuple, AbstractPropertyWriter.mode error)
protected boolean	ValueWriter.insertValue(double value, Property property, int idtuple, AbstractPropertyWriter.mode error)
protected boolean	DbDescriptorValuesWriter.insertValue(String value, Property property, int idtuple, AbstractPropertyWriter.mode error)
protected boolean	ValueWriter.insertValue(String value, Property property, int idtuple, AbstractPropertyWriter.mode error)
protected boolean	ValueWriter.insertValueNaN(Property property, int idtuple, AbstractPropertyWriter.mode error)
protected Dictionary	ProcessorOntology.moveProperty(Property property, ProcessorOntology.SIDE source, ProcessorOntology.SIDE destination)
protected void	ValueWriterNew.prepareStatementValues(IStructureRecord record, Property property)
protected void	AbstractPropertyWriter.propertyEntry(Property property)
protected void	AbstractPropertyWriter.write(Property property)

Method parameters in ambit2.db.processors with type arguments of type Property

Modifier and Type	Method and Description
net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>	ProcessorCreateProfileQuery.process(Profile<Property> target)
void	AbstractDescriptorCalculator.setDescriptors(Profile<Property> descriptors)

Uses of Property in ambit2.db.processors.quality

Methods in ambit2.db.processors.quality that return Property

Modifier and Type	Method and Description
Property	QualityValueWriter.create(IStructureRecord record)
Property	QualityValueWriter.getProperty()

Methods in ambit2.db.processors.quality with parameters of type Property

Modifier and Type	Method and Description
void	QualityValueWriter.setProperty(Property property)

Uses of Property in ambit2.db.readers

Fields in ambit2.db.readers with type parameters of type Property

Modifier and Type	Field and Description
protected net.idea.modbcum.i.IQueryRetrieval<Property>	ValuesByTemplateReader.propertyQuery

Methods in ambit2.db.readers that return Property

Modifier and Type	Method and Description
Property	PropertyValue.getProperty()
protected Property	RetrieveProfileValues.retrieveProperty(ResultSet rs)

Methods in ambit2.db.readers that return types with arguments of type Property

Modifier and Type	Method and Description
net.idea.modbcum.i.IQueryRetrieval<Property>	ValuesByTemplateReader.getPropertyQuery()

Methods in ambit2.db.readers with parameters of type Property

Modifier and Type	Method and Description
abstract String	RetrieveProfileValues.SearchMode.getParam(Property property)
protected void	RetrieveProfileValues.retrieveValue(ResultSet rs, IStructureRecord record, Property p)
protected abstract void	ValuesByTemplateReader.set(Result result, Property fieldname, Object value)
void	PropertyValue.setProperty(Property property)

Method parameters in ambit2.db.readers with type arguments of type Property

Modifier and Type	Method and Description
void	ValuesByTemplateReader.setPropertyQuery(net.idea.modbcum.i.IQueryRetrieval<Property> propertyQuery)

Constructors in ambit2.db.readers with parameters of type Property

Constructor and Description
PropertyValue(Property property)
PropertyValue(Property property, T value)
PropertyValue(Property property, T value, AbstractPropertyWriter.mode error)

Uses of Property in ambit2.db.reporters

Classes in ambit2.db.reporters with type parameters of type Property

Modifier and Type	Class and Description
class	QueryProperyReporter<Q extends net.idea.modbcum.i.IQueryRetrieval<Property>,Output>
class	QueryTemplateReporter<Q extends net.idea.modbcum.i.IQueryRetrieval<Property>> Adds Properties into a Template

Fields in ambit2.db.reporters declared as Property

Modifier and Type	Field and Description
protected Property	AbstractImageReporter.img
protected Property	SmilesReporter.key
protected Property	CSVReporter.similarityColumn

Fields in ambit2.db.reporters with type parameters of type Property

Modifier and Type	Field and Description
protected List<Property>	QueryHeaderReporter.header
protected Profile<Property>	QueryPacketReporter.template

Methods in ambit2.db.reporters that return Property

Modifier and Type	Method and Description
Property	SmilesReporter.Mode.getProperty()
Property	CSVReporter.getSimilarityColumn()

Methods in ambit2.db.reporters that return types with arguments of type Property

Modifier and Type	Method and Description
protected net.idea.modbcum.p.batch.AbstractBatchProcessor<net.idea.modbcum.i.IQueryRetrieval<Property>,Property>	QueryProperyReporter.createBatch(Q query)
protected net.idea.modbcum.p.batch.AbstractBatchProcessor<net.idea.modbcum.i.IQueryRetrieval<Property>,Property>	QueryProperyReporter.createBatch(Q query)
List<Property>	QueryHeaderReporter.getHeader()
protected List<Property>	CSVReporter.template2Header(Template template, boolean propertiesOnly)
protected List<Property>	QueryHeaderReporter.template2Header(Template template, boolean propertiesOnly)

Methods in ambit2.db.reporters with parameters of type Property

Modifier and Type	Method and Description
protected String	ARFF3ColReporter.getItemIdentifier(Property p)
protected String	ARFFReporter.getPropertyHeader(Property p)
protected String	CSVReporter.getUnits(Property p)
Object	QueryTemplateReporter.processItem(Property item)
void	CSVReporter.setSimilarityColumn(Property similarityColumn)

Constructor parameters in ambit2.db.reporters with type arguments of type Property

Constructor and Description
QueryPacketReporter(Profile<Property> template, int chunkSize)

Uses of Property in ambit2.db.results

Fields in ambit2.db.results with type parameters of type Property

Modifier and Type	Field and Description
protected TypedListModel<Property>	StoredQueryTableModel.fields
protected Hashtable<String,Profile<Property>>	StoredQueryTableModel.properties

Methods in ambit2.db.results with parameters of type Property

Modifier and Type	Method and Description
protected Object	StoredQueryTableModel.getField(IStructureRecord record, Property fieldname)

Method parameters in ambit2.db.results with type arguments of type Property

Modifier and Type	Method and Description
void	StoredQueryTableModel.setProfile(String key, Profile<Property> profile)

Uses of Property in ambit2.db.search.property

Fields in ambit2.db.search.property declared as Property

Modifier and Type	Field and Description
protected Property	FilteredCount.property
protected Property	QueryPairwiseTanimotoAndProperty.property

Fields in ambit2.db.search.property with type parameters of type Property

Modifier and Type	Field and Description
protected Profile<Property>	ValuesReader.profile

Methods in ambit2.db.search.property that return Property

Modifier and Type	Method and Description
Property	AbstractPropertyRetrieval.getObject(ResultSet rs)
Property	FreeTextPropertyQuery.getObject(ResultSet rs)
Property	PropertiesByDataset.getObject(ResultSet rs)
Property	QueryOntology.getObject(ResultSet rs)
Property	RetrieveProfile.getObject(ResultSet rs)
Property	TemplateQuery.getObject(ResultSet rs)
Property	AbstractPropertyRetrieval.getObject(ResultSet rs, Property p)
Property	FilteredCount.getProperty()
Property	QueryPairwiseTanimotoAndProperty.getProperty()

Methods in ambit2.db.search.property that return types with arguments of type Property

Modifier and Type	Method and Description
Profile<Property>	ValuesReader.getProfile()

Methods in ambit2.db.search.property with parameters of type Property

Modifier and Type	Method and Description
double	AbstractPropertyRetrieval.calculateMetric(Property property)
double	QueryOntology.calculateMetric(Property object)
Property	AbstractPropertyRetrieval.getObject(ResultSet rs, Property p)
protected void	ValuesReader.set(IStructureRecord result, Property fieldname, Object value)
void	FilteredCount.setProperty(Property property)
void	QueryPairwiseTanimotoAndProperty.setProperty(Property property)

Method parameters in ambit2.db.search.property with type arguments of type Property

Modifier and Type	Method and Description
void	ValuesReader.setProfile(Profile<Property> profile)

Uses of Property in ambit2.db.search.structure

Fields in ambit2.db.search.structure declared as Property

Modifier and Type	Field and Description
protected Property	QueryExactStructure.smartsProperty Deprecated.
protected Property	QuerySMARTS.smartsProperty

Methods in ambit2.db.search.structure with parameters of type Property

Modifier and Type	Method and Description
void	QueryFieldNumeric.setFieldname(Property fieldname)

Method parameters in ambit2.db.search.structure with type arguments of type Property

Modifier and Type	Method and Description
net.idea.modbcum.i.IQueryObject<IStructureRecord>	ProcessorMissingDescriptorsQuery.process(Profile<Property> descriptors)

Constructors in ambit2.db.search.structure with parameters of type Property

Constructor and Description
QueryFieldNumeric(String key, String cond, boolean byAlias, boolean chemicalsOnly, Property property)

Uses of Property in ambit2.db.simiparity.space

Classes in ambit2.db.simiparity.space with type parameters of type Property

Modifier and Type	Class and Description
class	QMap<P extends Property> Quantitative SAS map header

Methods in ambit2.db.simiparity.space that return Property

Modifier and Type	Method and Description
Property	QMap.getProperty()

Uses of Property in ambit2.db.substance.study

Methods in ambit2.db.substance.study that return Property

Modifier and Type	Method and Description
Property	ReadSubstanceProperty.getObject(ResultSet rs)

Uses of Property in ambit2.db.update.bundle.endpoints

Methods in ambit2.db.update.bundle.endpoints that return Property

Modifier and Type	Method and Description
Property	ReadEndpointsByBundle.getObject(ResultSet rs)

Uses of Property in ambit2.db.update.dataset

Constructors in ambit2.db.update.dataset with parameters of type Property

Constructor and Description
QueryDatasetByFeatures(Property property, net.idea.modbcum.q.conditions.StringCondition condition)

Uses of Property in ambit2.db.update.dictionary

Methods in ambit2.db.update.dictionary with parameters of type Property

Modifier and Type	Method and Description
void	TemplateAddProperty.setObject(Property object)

Constructors in ambit2.db.update.dictionary with parameters of type Property

Constructor and Description
DatasetTemplateAddProperty(SourceDataset template, Property property)
TemplateAddProperty(Dictionary template, Property property)
TemplateDeleteProperty(Dictionary template, Property property)

Uses of Property in ambit2.db.update.fpae

Fields in ambit2.db.update.fpae declared as Property

Modifier and Type	Field and Description
protected Property	CreateAtomEnvironment.property

Uses of Property in ambit2.db.update.property

Methods in ambit2.db.update.property with parameters of type Property

Modifier and Type	Method and Description
void	CreateProperty.setObject(Property object)

Constructors in ambit2.db.update.property with parameters of type Property

Constructor and Description
CreateProperty(Property property)
CreatePropertyReferenceID(Property property)
DeleteProperty(Property property)
UpdateProperty(Property property)

Uses of Property in ambit2.db.update.qlabel

Fields in ambit2.db.update.qlabel declared as Property

Modifier and Type	Field and Description
protected Property	ValuesQualityCheck.property

Methods in ambit2.db.update.qlabel that return Property

Modifier and Type	Method and Description
Property	ValuesQualityCheck.getProperty()

Methods in ambit2.db.update.qlabel with parameters of type Property

Modifier and Type	Method and Description
void	ValuesQualityCheck.setProperty(Property property)

Uses of Property in ambit2.db.update.qlabel.smarts

Fields in ambit2.db.update.qlabel.smarts declared as Property

Modifier and Type	Field and Description
protected Property	CreateSMARTSData.property

Uses of Property in ambit2.db.update.structure

Fields in ambit2.db.update.structure declared as Property

Modifier and Type	Field and Description
protected static Property	CreateStructure.struc_typeProperty

Uses of Property in ambit2.dbui

Fields in ambit2.dbui with type parameters of type Property

Modifier and Type	Field and Description
protected Profile<Property>	ProfileEditor.profile
protected AmbitRows<Property>	QueryFieldEditor.properties
protected AmbitRows<Property>	QueryFieldNumericEditor.properties

Methods in ambit2.dbui that return types with arguments of type Property

Modifier and Type	Method and Description
Profile<Property>	ProfileEditor.getObject()
Profile<Property>	ProfileEditor.process(Profile<Property> target)

Method parameters in ambit2.dbui with type arguments of type Property

Modifier and Type	Method and Description
QueryCombinedStructure	QueryCombinedEditor.process(net.idea.modbcum.i.IQueryRetrieval<Property> target)
Q	QueryEditor.process(net.idea.modbcum.i.IQueryRetrieval<Property> target)
QueryField	QueryFieldEditor.process(net.idea.modbcum.i.IQueryRetrieval<Property> target)
QueryFieldNumeric	QueryFieldNumericEditor.process(net.idea.modbcum.i.IQueryRetrieval<Property> target)
Profile<Property>	ProfileEditor.process(Profile<Property> target)
void	ProfileEditor.setObject(Profile<Property> object)

Uses of Property in ambit2.dbui.dictionary

Fields in ambit2.dbui.dictionary with type parameters of type Property

Modifier and Type	Field and Description
protected AmbitRows<Property>	DictionaryQueryPanel.details
protected Profile<Property>	DictionaryQueryPanel.profile

Methods in ambit2.dbui.dictionary that return types with arguments of type Property

Modifier and Type	Method and Description
Profile<Property>	DictionaryQueryPanel.getProfile()

Method parameters in ambit2.dbui.dictionary with type arguments of type Property

Modifier and Type	Method and Description
void	DictionaryQueryPanel.setProfile(Profile<Property> profile)

Uses of Property in ambit2.descriptors.processors

Fields in ambit2.descriptors.processors declared as Property

Modifier and Type	Field and Description
protected Property	PropertyCalculationProcessor.property
protected Property	BitSetGenerator.smartsProperty

Methods in ambit2.descriptors.processors that return Property

Modifier and Type	Method and Description
static Property	DescriptorsFactory.createDescriptor2Property(String className)
static Property	DescriptorsFactory.createDescriptor2Property(String className, String[] parameters)
static Property	DescriptorsFactory.descriptorValue2Property(org.openscience.cdk.qsar.IMolecularDescriptor descriptor, String name, org.openscience.cdk.qsar.DescriptorValue value)
Property	AtomEnvironmentGenerator.getProperty()
Property	AtomEnvironmentMatrixGenerator.getProperty()
Property	PropertyCalculationProcessor.getProperty()
protected Property	BitSetGenerator.getProperty()
protected Property	AtomEnvironmentGenerator.getTimeProperty()
protected Property	AtomEnvironmentMatrixGenerator.getTimeProperty()
protected Property	BitSetGenerator.getTimeProperty()

Methods in ambit2.descriptors.processors that return types with arguments of type Property

Modifier and Type	Method and Description
static List<Property>	DescriptorsFactory.createDescriptor2Properties(String className)
protected Profile<Property>	DescriptorsFactory.createResult()
Iterable<Property>	DescriptorValue2Property.getPropertyNames(org.openscience.cdk.qsar.DescriptorValue value)

Methods in ambit2.descriptors.processors with parameters of type Property

Modifier and Type	Method and Description
Object[]	PropertyCalculationProcessor.getParameters(Property property)
Object	DescriptorValue2Property.getValue(org.openscience.cdk.qsar.DescriptorValue descriptor, Property property, int propertyIndex)
void	PropertyCalculationProcessor.setProperty(Property property)

Method parameters in ambit2.descriptors.processors with type arguments of type Property

Modifier and Type	Method and Description
protected void	DescriptorsFactory.addToResult(String name, boolean enabled, int order, Profile<Property> result)

Uses of Property in ambit2.pubchem.rest

Methods in ambit2.pubchem.rest with parameters of type Property

Modifier and Type	Method and Description
protected Object	PubChemRestFinder.retrieveValue(IStructureRecord target, Property key)

Uses of Property in ambit2.rest.dataset

Fields in ambit2.rest.dataset with type parameters of type Property

Modifier and Type	Field and Description
protected Comparator<Property>	DatasetRDFWriter.comp
protected List<Property>	DatasetRDFWriter.header

Methods in ambit2.rest.dataset that return types with arguments of type Property

Modifier and Type	Method and Description
protected List<Property>	DatasetRDFWriter.template2Header(Template template, boolean propertiesOnly)

Methods in ambit2.rest.dataset with parameters of type Property

Modifier and Type	Method and Description
protected String	DatasetRDFWriter.writeHasSource(Property item)

Uses of Property in ambit2.rest.model.builder

Methods in ambit2.rest.model.builder that return Property

Modifier and Type	Method and Description
static Property	ModelBuilder.createPropertyFromReference(org.restlet.data.Reference attribute, LiteratureEntry le, org.restlet.data.Reference applicationRootReference, String referer)
Property	ModelBuilder.createPropertyFromReference(org.restlet.data.Reference attribute, LiteratureEntry le, String referer)

Methods in ambit2.rest.model.builder that return types with arguments of type Property

Modifier and Type	Method and Description
protected List<Property>	ExpertModelBuilder.createProperties(Algorithm algorithm)
protected List<Property>	SimpleModelBuilder.createProperties(Algorithm algorithm)

Uses of Property in ambit2.rest.model.predictor

Fields in ambit2.rest.model.predictor with type parameters of type Property

Modifier and Type	Field and Description
protected List<Property>	ExternalModelPredictor.predictedProperties

Uses of Property in ambit2.rest.property

Methods in ambit2.rest.property with parameters of type Property

Modifier and Type	Method and Description
String	PropertyURIReporter.getURI(String ref, Property record)

Uses of Property in ambit2.rest.rdf

Fields in ambit2.rest.rdf with type parameters of type Property

Modifier and Type	Field and Description
protected Hashtable<com.hp.hpl.jena.rdf.model.RDFNode,Property>	RDFPropertyIterator.confidenceLinks
protected Hashtable<String,Property>	RDFStructuresIterator.lookup

Methods in ambit2.rest.rdf that return Property

Modifier and Type	Method and Description
protected Property	RDFStructuresIterator.createFeature(com.hp.hpl.jena.rdf.model.RDFNode feature)
protected Property	RDFPropertyIterator.createRecord()
Property	RDFPropertyIterator.parseRecord(com.hp.hpl.jena.rdf.model.RDFNode propertyEntry, Property property)
Property	RDFPropertyIterator.parseRecord(com.hp.hpl.jena.rdf.model.RDFNode propertyEntry, Property property, int level)

Methods in ambit2.rest.rdf with parameters of type Property

Modifier and Type	Method and Description
protected void	RDFStructuresIterator.parseFeatureURI(String uri, Property property)
protected void	RDFPropertyIterator.parseObjectURI(com.hp.hpl.jena.rdf.model.RDFNode uri, Property property)
Property	RDFPropertyIterator.parseRecord(com.hp.hpl.jena.rdf.model.RDFNode propertyEntry, Property property)
Property	RDFPropertyIterator.parseRecord(com.hp.hpl.jena.rdf.model.RDFNode propertyEntry, Property property, int level)
protected void	RDFStructuresIterator.setFeatureValue(IStructureRecord record, Property key, com.hp.hpl.jena.rdf.model.RDFNode value)

Uses of Property in ambit2.rest.rdf.sparql

Methods in ambit2.rest.rdf.sparql that return Property

Modifier and Type	Method and Description
protected Property	RDFCompoundIterator.newProperty(com.hp.hpl.jena.rdf.model.RDFNode node)
protected Property	RDFFeatureIterator.newProperty(com.hp.hpl.jena.rdf.model.RDFNode node)

Methods in ambit2.rest.rdf.sparql that return types with arguments of type Property

Modifier and Type	Method and Description
protected RDFAbstractFeatureIterator<Property>	RDFCompoundIterator.getPropertyIterator(com.hp.hpl.jena.rdf.model.Model jenaModel)

Methods in ambit2.rest.rdf.sparql with parameters of type Property

Modifier and Type	Method and Description
protected void	RDFFeatureIterator.setName(Property record, String name)
protected void	RDFFeatureIterator.setOrigin(Property record, com.hp.hpl.jena.rdf.model.RDFNode node)
protected void	RDFFeatureIterator.setSameAs(Property record, com.hp.hpl.jena.rdf.model.RDFNode node)
protected void	RDFFeatureIterator.setUnits(Property record, String units)
protected void	RDFCompoundIterator.setValue(IStructureRecord record, Property property, double value)
protected void	RDFCompoundIterator.setValue(IStructureRecord record, Property property, float value)
protected void	RDFCompoundIterator.setValue(IStructureRecord record, Property property, int value)
protected void	RDFCompoundIterator.setValue(IStructureRecord record, Property property, String value)

Uses of Property in ambit2.smarts.processors

Methods in ambit2.smarts.processors that return Property

Modifier and Type	Method and Description
protected Property	SMARTSPropertiesGenerator.getProperty()
protected Property	SMARTSPropertiesReader.getProperty()
protected Property	SMARTSPropertiesGenerator.getTimeProperty()

Uses of Property in ambit2.tautomers.processor

Fields in ambit2.tautomers.processor with type parameters of type Property

Modifier and Type	Field and Description
protected Map<Object,Property>	StructureStandardizer.tags

Method parameters in ambit2.tautomers.processor with type arguments of type Property

Modifier and Type	Method and Description
static void	StructureStandardizer.renameTags(org.openscience.cdk.interfaces.IAtomContainer processed, Map<Object,Property> tags)
static void	StructureStandardizer.renameTags(org.openscience.cdk.interfaces.IAtomContainer processed, Map<Object,Property> tags, boolean removeIfDisabled)

Uses of Property in ambit2.ui

Fields in ambit2.ui with type parameters of type Property

Modifier and Type	Field and Description
protected Profile<Property>	AmbitSettingsListener.properties

Methods in ambit2.ui that return types with arguments of type Property

Modifier and Type	Method and Description
Profile<Property>	AmbitSettingsListener.getProperties()

Uses of Property in ambit2.ui.editors

Fields in ambit2.ui.editors with type parameters of type Property

Modifier and Type	Field and Description
protected TypedListModel<Property>	SelectFieldsPanel.fields
protected Profile<Property>	TemplateEditor.profile

Methods in ambit2.ui.editors that return types with arguments of type Property

Modifier and Type	Method and Description
TypedListModel<Property>	SelectFieldsPanel.getObject()
Profile<Property>	TemplateEditor.getObject()

Method parameters in ambit2.ui.editors with type arguments of type Property

Modifier and Type	Method and Description
void	SelectFieldsPanel.MOVE.move(TypedListModel<Property> fields, JList[] table, TypedListModel<Property>[] fieldsModel)
void	TemplateEditor.setObject(Profile<Property> object)
void	SelectFieldsPanel.setObject(TypedListModel<Property> object)

Constructor parameters in ambit2.ui.editors with type arguments of type Property

Constructor and Description
SelectFieldsPanel(TypedListModel<Property> fields, String help)
SelectFieldsPanel(TypedListModel<Property> fields, TypedListModel<Property> allFields, TypedListModel<Property> selectedFields, String help)
SelectFieldsPanel(TypedListModel<Property> fields, TypedListModel<Property> allFields, TypedListModel<Property> selectedFields, String help)
SelectFieldsPanel(TypedListModel<Property> fields, TypedListModel<Property> allFields, TypedListModel<Property> selectedFields, String help)

Uses of Property in ambit2.ui.table

Fields in ambit2.ui.table with type parameters of type Property

Modifier and Type	Field and Description
protected TypedListModel<Property>	StructureRecordsTableModel.fields
protected Hashtable<String,Profile<Property>>	StructureRecordsTableModel.properties

Method parameters in ambit2.ui.table with type arguments of type Property

Modifier and Type	Method and Description
void	StructureRecordsTableModel.setProfile(String key, Profile<Property> profile)

Uses of Property in ambit2.vega

Methods in ambit2.vega that return types with arguments of type Property

Modifier and Type	Method and Description
List<Property>	VegaShell.createProperties()
Map<String,Property>	VegaShell.getProperties()
protected Map<String,Property>	VegaShell.loadProperties()
List<Property>	ExternalModelVega.process(ExternalModel<VegaShell,org.openscience.cdk.interfaces.IAtomContainer> target)