| Package | Description |
|---|---|
| ambit2.base.data |
Base data structures; no chemistry.
|
| ambit2.base.data.substance |
Chemical substances, with complex composition (including nanomaterials)
|
| ambit2.db | |
| ambit2.db.chart | |
| ambit2.db.chemrelation | |
| ambit2.db.search | |
| ambit2.db.simiparity.space | |
| ambit2.db.update.dataset | |
| ambit2.db.update.storedquery | |
| ambit2.rest.dataset | |
| ambit2.rest.rdf |
| Modifier and Type | Class and Description |
|---|---|
class |
AbstractDataset |
class |
SourceDataset
A dataset
|
| Modifier and Type | Class and Description |
|---|---|
class |
SubstanceEndpointsBundle |
| Modifier and Type | Class and Description |
|---|---|
class |
SourceDatasetRows<M extends ISourceDataset>
TODO to be removed
|
| Modifier and Type | Class and Description |
|---|---|
class |
BarChartGenerator<T extends ISourceDataset> |
class |
PieChartGenerator<T extends ISourceDataset>
Generates pie chart with number of chemicals per group
|
| Modifier and Type | Method and Description |
|---|---|
protected String |
BarChartGeneratorDataset.getCategoryTitle(ISourceDataset target) |
protected String |
HistogramChartGenerator.getCategoryTitle(ISourceDataset target) |
protected String |
BarChartGeneratorDataset.getChartTitle(ISourceDataset target) |
protected String |
PropertiesChartGenerator.getDomainTitle(ISourceDataset target) |
protected int |
BarChartGeneratorDataset.getID(ISourceDataset target) |
protected int |
PieChartGenerator.getID(ISourceDataset target) |
protected String |
PropertiesChartGenerator.getRangeTitle(ISourceDataset target) |
protected String |
BarChartGeneratorDataset.getSQL(ISourceDataset target) |
protected String |
HistogramChartGenerator.getSQL(ISourceDataset target) |
protected String |
PieChartGenerator.getSQL(ISourceDataset target) |
protected String |
PropertiesChartGenerator.getSQL(ISourceDataset target) |
BufferedImage |
BarChartGeneratorDataset.process(ISourceDataset target) |
BufferedImage |
FingerprintHistogramDataset.process(ISourceDataset target) |
BufferedImage |
PropertiesChartGenerator.process(ISourceDataset target) |
BufferedImage |
XTabChartGenerator.process(ISourceDataset target) |
| Constructor and Description |
|---|
ReadDatasetRelation(String relation,
ISourceDataset dataset) |
| Modifier and Type | Interface and Description |
|---|---|
interface |
IStoredQuery |
| Modifier and Type | Class and Description |
|---|---|
class |
StoredQuery
StoredQuery (table queries)
|
| Modifier and Type | Method and Description |
|---|---|
ISourceDataset |
QMap.getDataset() |
| Modifier and Type | Method and Description |
|---|---|
void |
QMap.setDataset(ISourceDataset dataset) |
| Constructor and Description |
|---|
QMap(ISourceDataset dataset,
P property,
double activityThreshold,
double similarityThreshold) |
| Modifier and Type | Class and Description |
|---|---|
class |
AbstractReadDataset<T,M extends ISourceDataset> |
| Modifier and Type | Method and Description |
|---|---|
double |
ReadStoredQuery.calculateMetric(ISourceDataset object) |
| Modifier and Type | Class and Description |
|---|---|
class |
DatasetURIReporter<Q extends net.idea.modbcum.i.IQueryRetrieval<M>,M extends ISourceDataset> |
| Modifier and Type | Class and Description |
|---|---|
class |
RDFMetaDatasetIterator<M extends ISourceDataset>
Iterates over
SourceDataset |
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