Class Hierarchy (Ambit 2 4.0.1-SNAPSHOT API)

Class Hierarchy

java.lang.Object
- javax.swing.AbstractAction (implements javax.swing.Action, java.lang.Cloneable, java.io.Serializable)
  - ambit2.ui.AbstractAmbitAction
  - ambit2.jchempaint.editor.AbstractMoleculeAction
    - ambit2.jchempaint.editor.MoleculeEditAction
- ambit2.featureselection.AbstractAttributeSelection<T> (implements ambit2.featureselection.IAttributeSelection<T>)
  - ambit2.featureselection.RRelieFFAttributeSelection<T>
- org.openscience.cdk.renderer.visitor.AbstractAWTDrawVisitor (implements org.openscience.cdk.renderer.visitor.IDrawVisitor)
  - ambit2.rendering.AWTDrawVisitorWithImageMap
- java.util.AbstractCollection<E> (implements java.util.Collection<E>)
  - java.util.AbstractList<E> (implements java.util.List<E>)
    - java.util.ArrayList<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
      - ambit2.descriptors.processors.AtomEnvironmentList (implements ambit2.base.processors.IAmbitResult)
      - ambit2.base.data.study.MultiValue<V>
      - ambit2.similarity.knn.NearestNeighborsSearch<T> (implements ambit2.similarity.knn.INearestNeighborsSearch<T>)
      - net.idea.modbcum.i.processors.ProcessorsChain<Target,Result,P> (implements net.idea.modbcum.i.processors.IProcessor<Target,Result>)
        
        ambit2.db.processors.DBProcessorsChain<Target,Result,P> (implements net.idea.modbcum.i.IDBProcessor<Target,Result>)
      - ambit2.base.data.PropertyAnnotations
- ambit2.structure2name.components.AbstractComponent (implements ambit2.structure2name.components.IIUPACComponent)
  - ambit2.structure2name.components.AcyclicComponent
  - ambit2.structure2name.components.Chain
  - ambit2.structure2name.components.CyclicComponent
  - ambit2.structure2name.components.FunctionalGroup
- ambit2.base.data.AbstractDataset (implements ambit2.base.data.ISourceDataset)
- ambit2.core.data.AbstractDescriptorResultType<T> (implements org.openscience.cdk.qsar.result.IDescriptorResult)
  - ambit2.core.data.StringDescriptorResultType
- ambit2.rules.conditions.AbstractDescriptorSolver (implements ambit2.rules.conditions.IDescriptorSolver)
  - ambit2.rules.conditions.solvers.CDKDescriptorSolver
  - ambit2.reactions.reactor.ReactorDescriptorSolver
  - ambit2.reactions.rules.SyntheticStrategyDescriptorSolver
- ambit2.base.facet.AbstractFacet<T> (implements net.idea.modbcum.i.facet.IFacet<T>)
  - ambit2.db.facets.bookmarks.BookmarksByTopicFacet
  - ambit2.base.facet.BundleRoleFacet
  - ambit2.db.facets.bundle.BundleSummaryFacet
  - ambit2.db.facets.datasets.DatasetPrefixFacet
  - ambit2.db.substance.study.facet.OwnerFacet
  - ambit2.db.facets.propertyvalue.PropertyDatasetFacet<PROPERTY,DATASET>
    - ambit2.db.facets.qlabel.DatasetConsensusLabelFacet
    - ambit2.db.facets.qlabel.DatasetStructureQLabelFacet
    - ambit2.db.facets.qlabel.DatasetStrucTypeFacet
    - ambit2.db.facets.datasets.EndpointCompoundFacet
  - ambit2.db.facets.datasets.StringQueryFacet
  - ambit2.db.substance.study.facet.SubstanceByCategoryFacet
    - ambit2.db.substance.study.facet.ProtocolApplicationSummaryFacet
    - ambit2.db.substance.study.facet.ResultsCountFacet<E>
    - ambit2.db.substance.study.facet.SubstanceDataAvailabilityFacet
  - ambit2.base.facet.SubstanceStudyFacet
- org.openscience.cdk.fingerprint.AbstractFingerprinter (implements org.openscience.cdk.fingerprint.IFingerprinter)
  - org.openscience.cdk.fingerprint.CircularFingerprinter (implements org.openscience.cdk.fingerprint.IFingerprinter)
    - ambit2.descriptors.fingerprints.CircularFingerprintInterpretable (implements ambit2.descriptors.fingerprints.ISparseFingerprint<T>)
- ambit2.core.groups.AbstractGroup.EmptyIterator<T> (implements java.util.Iterator<E>)
- ambit2.core.groups.AbstractGroup.SelfIterable<T> (implements java.lang.Iterable<T>)
- ambit2.descriptors.AbstractKekulizationVerifier (implements org.openscience.cdk.qsar.IMolecularDescriptor)
  - ambit2.descriptors.SaturationCheckerVerifier
- javax.swing.AbstractListModel<E> (implements javax.swing.ListModel<E>, java.io.Serializable)
  - ambit2.ui.HeaderComboBoxModel (implements javax.swing.ComboBoxModel<E>)
  - ambit2.db.results.MemoryRowsModel<T> (implements java.beans.PropertyChangeListener, ambit2.base.data.TypedListModel<P>)
  - ambit2.base.data.ProfileListModel (implements javax.swing.event.ListDataListener, ambit2.base.data.TypedListModel<P>)
  - ambit2.db.results.RowsModel<T> (implements java.beans.PropertyChangeListener, ambit2.base.data.TypedListModel<P>)
- java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
  - java.util.TreeMap<K,V> (implements java.lang.Cloneable, java.util.NavigableMap<K,V>, java.io.Serializable)
    - ambit2.domain.stats.datastructures.Histogram<T>
    - ambit2.similarity.stats.Histogram<T>
- ambit2.model.AbstractModel<ID,Features,ResultType> (implements ambit2.model.IModelDefinition<ID,Features,ResultType>)
  - ambit2.similarity.AbstractSimilarityModel<ID,Features,ResultType>
    - ambit2.similarity.knn.NearestNeighborsSimilarity<ID,Features>
      - ambit2.similarity.knn.NNAtomEnvironmentSimilarity<ID>
      - ambit2.similarity.knn.NNFingerprintSimilarity<ID>
- org.openscience.cdk.qsar.AbstractMolecularDescriptor (implements org.openscience.cdk.qsar.IMolecularDescriptor)
  - ambit2.descriptors.constitutional.AbstractAtomCountDescriptor
    - ambit2.descriptors.constitutional.AtomCountHybridizationDescriptor
    - ambit2.descriptors.constitutional.AtomCountRelativeDescriptor
    - ambit2.descriptors.constitutional.HeteroAtomCountDescriptor
- ambit2.db.search.AbstractQuery<F,T,C,ResultType> (implements net.idea.modbcum.i.IParameterizedQuery<F,T,C>, net.idea.modbcum.i.IQueryObject<ResultType>)
  - ambit2.db.update.model.AbstractModelQuery<F,V> (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
    - ambit2.db.update.model.QueryModel (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
    - ambit2.db.update.model.ReadModel (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.search.property.AbstractPropertyRetrieval<F,T,C> (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
    - ambit2.db.search.property.FreeTextPropertyQuery
    - ambit2.db.search.property.ModelTemplates
    - ambit2.db.search.property.PropertiesByDataset
    - ambit2.db.search.property.PropertiesByQuery
    - ambit2.db.update.bundle.endpoints.ReadEndpointsByBundle
    - ambit2.db.update.property.ReadProperty
    - ambit2.db.substance.study.ReadSubstanceProperty
    - ambit2.db.search.property.RetieveFeatures
    - ambit2.db.search.property.RetrieveFieldNames
    - ambit2.db.search.property.RetrieveFieldNamesByAlias
    - ambit2.db.search.property.RetrieveFieldNamesByType
    - ambit2.db.search.property.RetrieveProfile
    - ambit2.db.search.property.TemplateQuery
  - ambit2.db.update.dataset.AbstractReadDataset<T,M> (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
    - ambit2.db.update.dataset.QueryDatasetByFeatures
    - ambit2.db.update.bundle.ReadBundle
      - ambit2.db.update.bundle.ReadBundleVersion
    - ambit2.db.update.dataset.ReadDataset
  - ambit2.db.substance.AbstractReadSubstance<F,T> (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
    - ambit2.db.substance.FacetedSearchSubstance
    - ambit2.db.substance.ReadByReliabilityFlags
    - ambit2.db.substance.ReadSubstance
    - ambit2.db.substance.ReadSubstanceByExternalIDentifier
    - ambit2.db.substance.ReadSubstanceByName
    - ambit2.db.substance.ReadSubstanceByOwner
    - ambit2.db.substance.ReadSubstanceByStudy
    - ambit2.db.substance.ReadSubstanceByType
    - ambit2.db.substance.ReadSubstances
    - ambit2.db.update.bundle.substance.ReadSubstancesByBundle
      - ambit2.db.update.bundle.substance.ReadSubstanceChemicalsUnionByBundle
    - ambit2.db.update.bundle.substance.ReadSubstancesByBundleCompounds
  - ambit2.db.search.structure.AbstractStructureQuery<F,T,C> (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
    - ambit2.db.update.structure.ChemicalByDataset
    - ambit2.db.search.structure.ChemicalByQueryFolder
    - ambit2.db.substance.relation.ChemicalBySubstanceRelation
    - ambit2.db.update.dataset.DatasetQueryFieldGeneric<T,C>
      - ambit2.db.update.dataset.DatasetQueryFieldNumeric
      - ambit2.db.update.dataset.DatasetQueryFieldString
    - ambit2.db.search.structure.FingerprintsByStatus
    - ambit2.db.search.structure.FreeTextQuery
    - ambit2.db.search.structure.MissingFingerprintsQuery
    - ambit2.db.search.structure.MissingInChIsQuery
    - ambit2.db.search.structure.NumberQuery<F>
    - ambit2.db.search.structure.QueryByIdentifierWithStructureFallback (implements net.idea.modbcum.i.IStoredProcStatement)
    - ambit2.db.search.structure.QueryDataset
    - ambit2.db.search.structure.QueryDatasetByID
    - ambit2.db.search.structure.QueryDistance
    - ambit2.db.search.structure.QueryExactStructure
    - ambit2.db.search.structure.QueryFieldAbstract<T,C,NC>
      - ambit2.db.search.structure.QueryField
      - ambit2.db.search.structure.QueryFieldMultiple
    - ambit2.db.search.structure.QueryFieldNumeric
    - ambit2.db.search.structure.QueryFunctionalGroups
    - ambit2.db.search.structure.QueryLookupStructure
    - ambit2.db.search.structure.QueryMissingDescriptor
    - ambit2.db.search.structure.QueryMissingDistances
    - ambit2.db.search.structure.QueryMissingProperty
    - ambit2.db.search.structure.QueryPrescreenBitSet
    - ambit2.db.simiparity.space.QueryQMapStructures
    - ambit2.db.search.structure.QuerySimilarity<F,T,C>
      - ambit2.db.search.structure.QueryAtomEnvironment
      - ambit2.db.search.structure.QuerySimilarityBitset
      - ambit2.db.search.structure.QuerySimilarityStructure
    - ambit2.db.search.structure.QuerySMARTS
    - ambit2.db.search.structure.QueryStoredResults
    - ambit2.db.search.structure.QueryStoredResultsByName
    - ambit2.db.search.structure.QueryStructure
    - ambit2.db.search.structure.QueryStructureByID
    - ambit2.db.search.structure.byproperty.QueryStructureByProperty<Q>
      - ambit2.db.search.structure.byproperty.QueryStructureByPropertyInCompounds
      - ambit2.db.search.structure.byproperty.QueryStructureByPropertyInDataset
      - ambit2.db.search.structure.byproperty.QueryStructuresByPropertyInResults
    - ambit2.db.search.structure.QueryStructureByQuality
    - ambit2.db.search.structure.QueryStructureByQualityPairLabel
    - ambit2.db.search.structure.QueryStructureByValueQuality
    - ambit2.db.search.structure.QueryStructureType
    - ambit2.db.search.structure.QueryStrucType
    - ambit2.db.update.bundle.chemicals.ReadChemicalsByBundle
    - ambit2.db.chemrelation.ReadStructureRelation
    - ambit2.db.update.fp.ReadStructuresByFingerprint
    - ambit2.db.substance.relation.ReadSubstanceRelation
  - ambit2.db.readers.AbstractStructureRetrieval<R> (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
    - ambit2.db.readers.RetrieveAtomContainer
    - ambit2.db.readers.RetrieveStructure
      - ambit2.db.cache.RetrieveStructureImagePath
  - ambit2.db.search.structure.pairwise.ChemicalSpaceQuery (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>, net.idea.modbcum.i.IStoredProcStatement)
  - ambit2.db.version.DBVersionQuery (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.search.DictionaryQuery<T> (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
    - ambit2.db.search.DictionaryObjectQuery
    - ambit2.db.search.DictionarySubjectQuery
  - ambit2.db.search.property.PropertyCount (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.search.property.PropertyRange (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.search.property.PropertyStatsNumeric (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.search.property.PropertyStatsString (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.cache.QueryCachedResults<T> (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
    - ambit2.db.cache.QueryCachedResultsBoolean
  - ambit2.db.search.qlabel.QueryConsensus (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.search.QueryExperiment<T,C,ResultType>
  - ambit2.db.update.fp.QueryFingerprints (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.search.property.QueryMetricRange (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.search.property.QueryOntology (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.search.property.QueryPairwiseTanimoto (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
    - ambit2.db.search.property.QueryPairwiseTanimotoAndProperty
  - ambit2.db.search.qlabel.QueryQLabel (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.simiparity.space.QueryQMap (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.simiparity.space.QueryQMapSpace (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.search.QuerySmilesByID (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.search.structure.pairwise.QueryStructurePairs<Dataset1,Dataset2> (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
    - ambit2.db.search.structure.pairwise.QueryStructurePairsDataset
    - ambit2.db.search.structure.pairwise.QueryStructurePairsMixed
    - ambit2.db.search.structure.pairwise.QueryStructurePairsRDataset
  - ambit2.db.search.QueryUser (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.update.bookmark.ReadAnnotation (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.update.bookmark.ReadBookmark (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.readers.ReadChemicalIds (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.update.dataset.ReadDatasetLicense (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.chemrelation.ReadDatasetRelation (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.substance.study.ReadEffectRecordAbstract<F,ER> (implements net.idea.modbcum.i.IParameterizedQuery<F,T,C>, net.idea.modbcum.i.IQueryRetrieval<ResultType>)
    - ambit2.db.substance.study.ReadEffectRecord
    - ambit2.db.substance.study.ReadEffectRecordBySubstance
      - ambit2.db.update.bundle.effects.ReadEffectRecordByBundle
      - ambit2.db.update.bundle.matrix.ReadEffectRecordByBundleMatrix
  - ambit2.db.update.propertyannotations.ReadPropertyAnnotations (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.update.queryfolder.ReadQueryFolder (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.update.reference.ReadReference (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.update.storedquery.ReadStoredQuery (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.substance.relation.ReadSubstanceComposition (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.substance.ids.ReadSubstanceIdentifiers (implements net.idea.modbcum.i.IParameterizedQuery<F,T,C>, net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.substance.study.ReadSubstanceStudy<PA> (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.readers.RetrieveDatasets (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.readers.RetrieveDescriptor (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.readers.RetrieveField<ResultType> (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
    - ambit2.db.readers.RetrieveFieldPropertyValue
    - ambit2.db.readers.RetrieveFieldStructure
  - ambit2.db.readers.RetrieveGroupedValuesByAlias (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.readers.RetrieveModelTemplates<ResultType> (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
    - ambit2.db.readers.RetrieveModelTemplatesPropertyValue
  - ambit2.db.readers.RetrieveProfileValues (implements net.idea.modbcum.i.IMultiRetrieval<V>, net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.readers.RetrieveProfileValuesAsRow (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.search.structure.pairwise.RetrieveStructurePair (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.readers.RetrieveTemplate<ResultType> (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
    - ambit2.db.readers.RetrieveTemplatePropertyValue
    - ambit2.db.readers.RetrieveTemplateStructure
  - ambit2.db.search.structure.ScopeQuery (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.update.storedquery.SearchStoredQueries (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
- net.idea.modbcum.q.query.AbstractQuery<F,T,C,ResultType> (implements net.idea.modbcum.i.IParameterizedQuery<F,T,C>, net.idea.modbcum.i.IQueryObject<ResultType>)
  - net.idea.modbcum.q.facet.AbstractFacetQuery<F,T,C,FACET> (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
    - ambit2.db.facets.bookmarks.BookmarksByTopicFacetQuery
    - ambit2.db.update.bundle.effects.BundleStudyFacetQuery
    - ambit2.db.facets.bundle.BundleSummaryQuery
    - ambit2.db.facets.compounds.ChemicalRoleByBundle
    - ambit2.db.facets.compounds.CollectionsByChemical
    - ambit2.db.facets.qlabel.DatasetChemicalsQualityStats
    - ambit2.db.facets.qlabel.DatasetStructureQualityStats
    - ambit2.db.facets.qlabel.DatasetStrucTypeStats
    - ambit2.db.facets.datasets.EndpointCompoundFacetQuery
    - ambit2.db.facets.bundle.EndpointRoleByBundle
    - ambit2.db.substance.study.facet.OwnerSubstanceStats
    - ambit2.db.facets.datasets.PrefixFacetQuery<PARAM,FACET>
      - ambit2.db.facets.datasets.DatasetByPrefixNameFacetQuery
    - ambit2.db.facets.propertyvalue.PropertyDatasetFacetQuery
    - ambit2.db.update.dataset.QueryCount<FACET>
      - ambit2.db.substance.QueryCountBundles
      - ambit2.db.update.dataset.QueryCountChemicalInDataset
      - ambit2.db.update.dataset.QueryCountDataset
      - ambit2.db.update.dataset.QueryCountDatasetIntersection<FACET>
      - ambit2.db.substance.QueryCountEndpoints<E>
      - ambit2.db.substance.QueryCountInterpretationResults
      - ambit2.db.model.QueryCountModels
      - ambit2.db.update.dataset.QueryCountProperties
      - ambit2.db.substance.QueryCountProtocolApplications<F>
      - ambit2.db.substance.QueryCountSubstances
      - ambit2.db.substance.QueryCountSubstanceTypes
      - ambit2.db.update.dataset.QueryCountValues
    - ambit2.db.facets.bundle.SubstanceRoleByBundle
    - ambit2.db.substance.study.facet.SubstanceStudyFacetQuery
  - net.idea.modbcum.q.query.BucketQuery<V> (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
    - net.idea.modbcum.q.query.SQLFileQuery<V>
      - ambit2.db.search.SQLFileQueryParams (implements net.idea.modbcum.i.IJSONQueryParams)
        
        ambit2.db.substance.study.SubstanceStudyFlatQuery
  - ambit2.db.update.bundle.BundleOwnerByNumber (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.substance.properties.ReadChemPropertiesByComposition (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
    - ambit2.db.substance.ids.ReadChemIdentifiersByComposition
- ambit2.base.relation.AbstractRelation<RELATION_TYPE,RELATION_METRIC,FIRSTSTRUC,SECONDSTRUC> (implements ambit2.base.interfaces.IStructureRelation<RELATION_TYPE,RELATION_METRIC,FIRSTSTRUC,SECONDSTRUC>)
  - ambit2.base.relation.composition.CompositionRelation (implements ambit2.base.interfaces.IStructureRecord)
    - ambit2.base.relation.composition.Additive
    - ambit2.base.relation.composition.Constituent
    - ambit2.base.relation.composition.Impurity
  - ambit2.base.relation.StructureRelation
    - ambit2.base.relation.SimilarityRelation
    - ambit2.base.relation.TautomerRelation
- ambit2.db.AbstractRepositoryAccess
- ambit2.smarts.query.AbstractSmartsPattern<T> (implements ambit2.smarts.query.ISmartsPattern<T>, java.io.Serializable)
  - ambit2.smarts.query.FastSmartsMatcher
  - ambit2.smarts.query.SmartsPatternAmbit
  - ambit2.smarts.query.SmartsPatternCDK
- ambit2.core.processors.AbstractStructureProcessor (implements net.idea.modbcum.i.processors.IProcessor<Target,Result>)
  - ambit2.core.processors.FragmentProcessor
  - ambit2.core.processors.IsotopesProcessor
  - ambit2.smarts.processors.SMIRKSProcessor
    - ambit2.smarts.processors.NeutraliseProcessor
- javax.swing.table.AbstractTableModel (implements java.io.Serializable, javax.swing.table.TableModel)
  - ambit2.ui.table.BrowsableTableModel (implements ambit2.ui.table.IBrowserMode, ambit2.base.data.IFilteredColumns, ambit2.ui.table.IFindNavigator<E>, ambit2.ui.table.IPageNavigator, ambit2.ui.table.IRecordNavigator, ambit2.base.data.ISelectableRecords, ambit2.base.data.ISortableColumns, javax.swing.event.TableModelListener)
  - ambit2.dbui.CachedRowSetTableModel
  - ambit2.similarity.stats.ConfusionMatrix
  - ambit2.base.data.PropertiesTableModel
  - ambit2.db.results.ResultSetTableModel
    - ambit2.db.results.StoredQueryTableModel (implements ambit2.base.data.IFilteredColumns, ambit2.base.data.ISelectableRecords, ambit2.base.data.ISortableColumns)
  - ambit2.ui.table.StructureRecordsTableModel
- net.idea.modbcum.q.update.AbstractUpdate<Group,Target> (implements net.idea.modbcum.i.query.IQueryUpdate<Group,Target>)
  - ambit2.db.update.AbstractObjectUpdate<Target>
    - ambit2.db.update.bookmark.CreateBookmark
    - ambit2.db.update.bundle.CreateBundle
    - ambit2.db.update.chemical.CreateChemical
    - ambit2.db.update.dataset.CreateDataset
    - ambit2.db.update.dictionary.CreateDictionary
      - ambit2.db.update.dictionary.UpdateDictionary
    - ambit2.db.update.bundle.matrix.CreateMatrixFromBundle
    - ambit2.db.update.model.CreateModel
    - ambit2.db.update.property.CreateProperty
    - ambit2.db.update.property.CreatePropertyReferenceID
    - ambit2.db.update.reference.CreateReference
    - ambit2.db.update.structure.CreateStructure
    - ambit2.db.substance.CreateSubstance
    - ambit2.db.update.bookmark.DeleteBookmark
    - ambit2.db.update.chemical.DeleteChemical
    - ambit2.db.update.dictionary.DeleteDictionary
    - ambit2.db.update.bundle.matrix.DeleteMatrixFromBundle
    - ambit2.db.update.model.DeleteModel
    - ambit2.db.update.property.DeleteProperty
    - ambit2.db.update.reference.DeleteReference
    - ambit2.db.update.structure.DeleteStructure
    - ambit2.db.substance.DeleteSubstance
    - ambit2.db.update.bookmark.UpdateBookmark
    - ambit2.db.update.bundle.UpdateBundle
    - ambit2.db.update.dataset.UpdateDataset
    - ambit2.db.update.model.UpdateModel
    - ambit2.db.update.property.UpdateProperty
    - ambit2.db.update.reference.UpdateReference
    - ambit2.db.update.structure.UpdateStructure
  - net.idea.modbcum.q.update.AbstractObjectUpdate<Target>
    - ambit2.db.update.bundle.CreateBundleCopy (implements net.idea.modbcum.i.IStoredProcStatement)
    - ambit2.db.update.bundle.CreateBundleVersion (implements net.idea.modbcum.i.IStoredProcStatement)
  - ambit2.db.chemrelation.AbstractUpdateStructureRelation<S,O,RELATION,METRIC>
    - ambit2.db.chemrelation.DeleteStructureRelation
    - ambit2.db.substance.relation.DeleteSubstanceRelation
    - ambit2.db.chemrelation.UpdateStructureRelation
    - ambit2.db.substance.relation.UpdateSubstanceRelation
  - ambit2.db.update.bundle.chemicals.AddAllChemicalsperSubstanceToBundle
  - ambit2.db.update.bundle.chemicals.AddChemicalToBundle
  - ambit2.db.update.bundle.substance.AddCompoundAsSubstanceToBundle
  - ambit2.db.update.bundle.endpoints.AddEndpointToBundle
  - ambit2.db.update.bundle.substance.AddSubstanceToBundle
  - ambit2.db.update.fpae.CreateAtomEnvironment
  - ambit2.db.update.fpae.CreateAtomEnvironmentMatrix
  - ambit2.db.update.fp.CreateFingerprintChemical
  - ambit2.db.update.fp.CreateFingerprintStructure
  - ambit2.db.update.propertyannotations.CreatePropertyAnnotation
  - ambit2.db.update.propertyannotations.CreatePropertyAnnotations
  - ambit2.db.update.qlabel.CreateQLabelCAS
  - ambit2.db.update.qlabel.CreateQLabelEINECS
  - ambit2.db.update.qlabel.CreateQLabelFingerprints
  - ambit2.db.update.qlabel.CreateQLabelPair
  - ambit2.db.update.queryfolder.CreateQueryFolder
  - ambit2.db.update.qlabel.smarts.CreateSMARTSData (implements net.idea.modbcum.i.query.IQueryUpdate<Group,Target>)
  - ambit2.db.update.storedquery.CreateStoredQuery
  - ambit2.db.update.qlabel.CreateStructureQLabel
  - ambit2.db.update.structure.CreateStrucType
  - ambit2.db.update.qlabel.CreateValueQLabel
  - ambit2.db.update.dataset.DatasetAddStructure
  - ambit2.db.update.dataset.DatasetDeleteStructure
  - ambit2.db.update.dictionary.DatasetTemplateAddProperty
  - ambit2.db.update.fpae.DeleteAtomEnvironment
  - ambit2.db.update.bundle.DeleteBundle
  - ambit2.db.update.bundle.chemicals.DeleteChemicalsFromBundle
  - ambit2.db.update.dataset.DeleteDataset (implements net.idea.modbcum.i.IStoredProcStatement)
  - ambit2.db.substance.study.DeleteEffectRecords
  - ambit2.db.update.bundle.endpoints.DeleteEndpointFromBundle
  - ambit2.db.update.bundle.matrix.DeleteMatrixProtocolApplicationValue<VALUE>
  - ambit2.db.update.bundle.matrix.DeleteMatrixValue<VALUE>
  - ambit2.db.update.propertyannotations.DeletePropertyAnnotation
  - ambit2.db.update.queryfolder.DeleteQueryFolder
  - ambit2.db.update.storedquery.DeleteStoredQuery
  - ambit2.db.update.qlabel.DeleteStructureQLabel
  - ambit2.db.substance.study.DeleteStudy
  - ambit2.db.update.bundle.substance.DeleteSubstanceFromBundle
  - ambit2.db.update.qlabel.DeleteValueQLabel
  - ambit2.db.update.storedquery.FilteredSelectStoredQuery
  - ambit2.db.update.storedquery.QueryAddTemplate
  - ambit2.db.update.storedquery.QueryDeleteStructure
  - ambit2.db.update.storedquery.QueryDeleteTemplate
  - ambit2.db.update.storedquery.SelectStoredQuery
  - ambit2.db.update.qlabel.SmilesUniquenessCheck
  - ambit2.db.update.dictionary.TemplateAddProperty
  - ambit2.db.update.dictionary.TemplateDeleteProperty
  - ambit2.db.update.chemical.UpdateChemical<C>
  - ambit2.db.update.value.UpdateCompoundPropertyValueNumber
  - ambit2.db.update.value.UpdateCompoundPropertyValueString
  - ambit2.db.substance.study.UpdateEffectRecords
    - ambit2.db.substance.study.UpdateEffectRecordsBundle
  - ambit2.db.update.propertyannotations.UpdatePropertyAnnotation
  - ambit2.db.update.queryfolder.UpdateQueryFolder
  - ambit2.db.update.storedquery.UpdateSelectedRecords
  - ambit2.db.update.storedquery.UpdateStoredQuery
  - ambit2.db.update.value.UpdateStructurePropertyIDNumber
  - ambit2.db.update.value.UpdateStructurePropertyIDString
  - ambit2.db.substance.UpdateSubstance<C>
  - ambit2.db.substance.ids.UpdateSubstanceIdentifiers<C>
  - ambit2.db.substance.study.UpdateSubstanceStudy
    - ambit2.db.substance.study.UpdateSubstanceStudyBundle
  - ambit2.db.update.qlabel.ValuesQualityCheck
- ambit2.db.reporters.xlsx.AddDimensionedImage
- ambit2.db.reporters.xlsx.AddDimensionedImage.ClientAnchorDetail
- ambit2.db.reporters.xlsx.AddDimensionedImage.ConvertImageUnits
- ambit2.core.data.model.Algorithm<T> (implements java.lang.Comparable<T>, java.io.Serializable)
- ambit2.base.data.AmbitBean (implements java.io.Serializable)
  - ambit2.base.data.AbstractLabel<LABEL> (implements java.lang.Comparable<T>)
    - ambit2.base.data.ConsensusLabel
    - ambit2.base.data.QLabel
  - ambit2.descriptors.FunctionalGroup (implements net.idea.modbcum.i.processors.IProcessor<Target,Result>)
  - ambit2.base.data.LiteratureEntry (implements ambit2.base.data.ILiteratureEntry)
  - ambit2.base.data.SelectionBean<T>
  - ambit2.base.data.SourceDataset (implements java.lang.Comparable<T>, ambit2.base.data.ISourceDataset)
- ambit2.core.config.AmbitCONSTANTS
- ambit2.db.version.AmbitDBVersion (implements java.io.Serializable)
- ambit2.ml.io.app.AmbitML
- ambit2.ui.AmbitSettingsListener (implements org.openscience.cdk.io.listener.IReaderListener, org.openscience.cdk.io.listener.IWriterListener)
- ambit2.reactions.cli.AmbitSmirksCli
- ambit2.base.data.AmbitUser
- ambit2.tautomers.zwitterion.AminoGroup (implements ambit2.tautomers.zwitterion.IBasicCenter)
- ambit2.rest.rdf.Annotea
- ambit2.groupcontribution.utils.math.ApplicabilityDomain
- ambit2.core.data.ArrayResult<T> (implements org.openscience.cdk.qsar.result.IDescriptorResult)
  - ambit2.core.data.IntArrayResult
  - ambit2.core.data.StringArrayResult
- ambit2.groupcontribution.utils.math.ArrayUtils
- ambit2.export.isa.v1_0.objects.Assay
- ambit2.reactions.rules.scores.AtomComplexity
- ambit2.tautomers.rules.AtomCondition
- ambit2.core.data.distances.AtomDistance
- ambit2.descriptors.AtomEnvironentMatrix (implements org.openscience.cdk.fingerprint.IFingerprinter)
  - ambit2.descriptors.AtomEnvironmentMatrixDescriptor (implements org.openscience.cdk.qsar.IMolecularDescriptor)
- ambit2.descriptors.AtomEnvironment (implements java.lang.Comparable<T>, java.io.Serializable)
- ambit2.descriptors.AtomEnvironmentDescriptor (implements org.openscience.cdk.qsar.IMolecularDescriptor)
- ambit2.similarity.measure.AtomEnvironmentsDistance (implements ambit2.similarity.measure.IDistanceFunction<T>)
- ambit2.smarts.AtomEquivalenceInfo
- org.openscience.cdk.renderer.generators.AtomNumberGenerator (implements org.openscience.cdk.renderer.generators.IGenerator<T>)
  - ambit2.rendering.AtomLabelGenerator
    - ambit2.rendering.ImageMapGenerator
- ambit2.groupcontribution.correctionfactors.AtomPairCorrectionFactor (implements ambit2.groupcontribution.correctionfactors.ICorrectionFactor)
- ambit2.smarts.AtomSmartsNode
- ambit2.descriptors.AtomTypeVerifierDescriptor (implements org.openscience.cdk.qsar.IMolecularDescriptor)
- ambit2.domain.stats.transforms.densityestimation.Bandwidth
- org.openscience.cdk.renderer.generators.BasicAtomGenerator (implements org.openscience.cdk.renderer.generators.IGenerator<T>)
  - ambit2.rendering.AtomAnnotationGenerator
- javax.swing.plaf.basic.BasicTableHeaderUI.MouseInputHandler (implements javax.swing.event.MouseInputListener)
  - ambit2.ui.EditableHeaderUI.MouseInputHandler
- ambit2.ui.editors.BeanEditor<L> (implements ambit2.base.interfaces.IAmbitEditor<T>)
  - ambit2.ui.editors.AmbitUserEditor
  - ambit2.ui.editors.DictionaryEditor
  - ambit2.dbui.LoginPanel
  - ambit2.ui.editors.PropertyEditor
  - ambit2.dbui.SourceDatasetEditor
  - ambit2.ui.editors.StringBeanEditor
- ambit2.rest.rdf.BibTex
- ambit2.similarity.stats.Bin<T> (implements java.lang.Comparable<T>)
  - ambit2.similarity.stats.DoubleHistogramBin
  - ambit2.similarity.stats.SelfBin<T>
    - ambit2.domain.stats.datastructures.SubcategoryBin<T>
- ambit2.smarts.BinaryCombinations
- ambit2.similarity.measure.BinaryKernelDistance (implements ambit2.similarity.measure.IDistanceFunction<T>)
- ambit2.descriptors.topological.BonchevCentricInformationIndicesDescriptor (implements org.openscience.cdk.qsar.IMolecularDescriptor)
- ambit2.base.data.Bookmark (implements java.io.Serializable)
- ambit2.rendering.CachedImage<MORE>
- ambit2.db.CachedRowSetFactory
- ambit2.tautomers.CACTVSRanking
- ambit2.groupcontribution.Calculator
- ambit2.rest.task.CallableDatasetCreator (implements java.util.concurrent.Callable<V>)
- ambit2.rest.task.CallableProtectedTask<USERID> (implements net.idea.restnet.i.aa.IAuthToken<T>, net.idea.restnet.i.task.ICallableTask)
  - ambit2.rest.task.CallableMockup<USERID>
  - ambit2.rest.task.CallablePOST<USERID>
    - ambit2.rest.task.CallableBuilder<USERID>
  - ambit2.rest.task.CallableQueryProcessor<Target,Result,USERID>
    - ambit2.rest.model.task.CallableModelCreator<DATA,Item,Builder,USERID>
      - ambit2.rest.task.CallableNumericalModelCreator<USERID>
      - ambit2.rest.task.weka.CallableWekaModelCreator<USERID>
    - ambit2.rest.model.task.CallableModelPredictor<ModelItem,Predictor,USERID>
      - ambit2.rest.task.weka.CallableWekaPredictor<T,USERID>
- ambit2.tautomers.ranking.CanonicTautomer
- ambit2.structure2name.rules.CarbonData
- ambit2.tautomers.zwitterion.CarboxylicGroup (implements ambit2.tautomers.zwitterion.IAcidicCenter)
- ambit2.groupcontribution.descriptors.CDKDescriptorInfo
- ambit2.groupcontribution.descriptors.CDKDescriptorManager
- ambit2.core.helper.CDKHueckelAromaticityDetector
- ambit2.descriptors.geometrical.CGIDescriptor
- ambit2.chebi.ChEBIClient (implements java.util.Iterator<E>)
- ambit2.base.data.ChEMBLProperties
- ambit2.rest.rdf.chembl.ChEMBLRawReader (implements ambit2.core.io.IRawReader<T>)
- ambit2.reactions.rules.scores.ChemComplexityUtils
- ambit2.export.isa.v1_0.objects.ChemicalName
- org.openscience.cdk.ChemObject (implements java.lang.Cloneable, org.openscience.cdk.interfaces.IChemObject, java.io.Serializable)
  - org.openscience.cdk.Element (implements java.lang.Cloneable, org.openscience.cdk.interfaces.IElement, java.io.Serializable)
    - org.openscience.cdk.Isotope (implements java.lang.Cloneable, org.openscience.cdk.interfaces.IIsotope, java.io.Serializable)
      - org.openscience.cdk.AtomType (implements java.lang.Cloneable, org.openscience.cdk.interfaces.IAtomType, java.io.Serializable)
        
        org.openscience.cdk.Atom (implements java.lang.Cloneable, org.openscience.cdk.interfaces.IAtom, java.io.Serializable)
        
        org.openscience.cdk.PseudoAtom (implements java.lang.Cloneable, org.openscience.cdk.interfaces.IPseudoAtom, java.io.Serializable)
        
        ambit2.core.groups.AbstractGroup (implements ambit2.core.groups.ISGroup)
        
        ambit2.core.groups.ComponentGroup
        
        ambit2.core.groups.ContainerGroup
        
        ambit2.core.groups.DataGroup
        
        ambit2.core.groups.GenericGroup
        
        ambit2.core.groups.MonomerGroup
        
        ambit2.core.groups.MultipleGroup (implements ambit2.core.groups.IExpandable)
        
        ambit2.core.groups.StructureRepeatingUnit
        
        ambit2.core.groups.SuperAtom (implements ambit2.core.groups.IExpandable)
  - ambit2.core.groups.SuppleAtomContainer (implements java.lang.Cloneable, org.openscience.cdk.interfaces.IAtomContainer, org.openscience.cdk.interfaces.IChemObjectListener, ambit2.core.groups.IFiltered<T>, java.io.Serializable)
- ambit2.smarts.ChemObjectFactory
- org.openscience.cdk.io.ChemObjectIO (implements org.openscience.cdk.io.IChemObjectIO)
  - org.openscience.cdk.io.DefaultChemObjectReader (implements org.openscience.cdk.io.ISimpleChemObjectReader)
    - ambit2.core.io.DelimitedFileReader (implements org.openscience.cdk.io.IChemObjectReader)
    - org.openscience.cdk.io.MDLReader
      - ambit2.core.io.FilteredMDLReader
    - ambit2.core.io.MDLReader
    - ambit2.mopac.Mopac7Reader
  - org.openscience.cdk.io.DefaultChemObjectWriter (implements org.openscience.cdk.io.IChemObjectWriter)
    - ambit2.core.io.FilesWithHeaderWriter
      - ambit2.core.io.ArffWriter
      - ambit2.core.io.DelimitedFileWriter
      - ambit2.core.io.PDFWriter
    - ambit2.core.io.FileWithHeaderWriter
      - ambit2.core.io.XLSFileWriter
    - ambit2.mopac.Mopac7Writer
    - ambit2.core.io.fp.MultiFingerprintsWriter
  - org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader<T> (implements org.openscience.cdk.io.iterator.IIteratingChemObjectReader<T>)
    - ambit2.core.io.ECHAPreregistrationListReader (implements ambit2.core.io.IRawReader<T>)
    - ambit2.core.io.I5ReaderSimple (implements ambit2.base.interfaces.ICiteable, ambit2.core.io.IRawReader<T>)
    - ambit2.core.io.IteratingChemObjectReaderWrapper
    - ambit2.core.io.IteratingFilesWithHeaderReader<COLUMN>
      - ambit2.core.io.IteratingDelimitedFileReaderComplexHeader<COLUMN>
        
        ambit2.core.io.IteratingDelimitedFileReader (implements org.openscience.cdk.io.iterator.IIteratingChemObjectReader<T>)
        
        ambit2.core.io.sj.MalariaHTSDataDelimitedReader
        
        ambit2.core.io.ToxcastAssayReader
      - ambit2.core.io.IteratingXLSReader
        
        ambit2.core.io.bcf.EurasBCFReader
    - ambit2.core.io.IteratingFolderReader<T,ItemReader>
      - ambit2.core.io.IteratingMolFolderReader
      - ambit2.core.io.RawIteratingFolderReader (implements ambit2.core.io.IRawReader<T>)
        
        ambit2.core.io.ZipReader<OPTIONS>
    - org.openscience.cdk.io.iterator.IteratingSDFReader
      - ambit2.core.io.InteractiveIteratingMDLReader
    - ambit2.core.io.RawIteratingCSVReader (implements ambit2.base.interfaces.ICiteable, ambit2.core.io.IRawReader<T>)
    - ambit2.core.io.RawIteratingReader<T> (implements ambit2.base.interfaces.ICiteable, ambit2.core.io.IRawReader<T>)
      - ambit2.core.io.RawIteratingMOLReader
      - ambit2.core.io.pdb.RawIteratingPDBReader
      - ambit2.core.io.RawIteratingSDFReader
      - ambit2.some.SOMERawReader
    - ambit2.core.io.json.SubstanceStudyParser (implements ambit2.base.interfaces.ICiteable, ambit2.core.io.IRawReader<T>)
    - ambit2.core.io.ToXMLReaderSimple (implements ambit2.core.io.IRawReader<T>)
- ambit2.smarts.ChemObjectToSmiles
- ambit2.db.search.structure.pairwise.ChemSpaceCell (implements java.io.Serializable)
- ambit2.smarts.ChiralPermutations
- ambit2.base.data.ClassHolder
- ambit2.ui.editors.ClassHolderEditor
- ambit2.smarts.ClosureBond
- ambit2.ml.mlib.ClusteringApp
- ambit2.smarts.CMLUtilities
- ambit2.tautomers.CombinedRuleInstance (implements ambit2.tautomers.IRuleInstance)
- ambit2.base.external.Command
- ambit2.base.external.CommandShell<INPUT,OUTPUT> (implements net.idea.modbcum.i.processors.IProcessor<Target,Result>)
  - ambit2.dragon.AbstractDescriptorShell
    - ambit2.dragon.DragonShell
    - ambit2.vega.VegaShell
  - ambit2.mopac.AbstractMopacShell
    - ambit2.mopac.MopacShell
    - ambit2.mopac.MopacShellBalloon
    - ambit2.mopac.MopacShellOB
  - ambit2.core.external.ShellSDFoutput<INPUT>
    - ambit2.core.smiles.OpenBabelAbstractShell<X>
      - ambit2.core.smiles.OpenBabelDepiction
      - ambit2.core.smiles.OpenBabelGen3D
      - ambit2.core.smiles.OpenBabelShell
    - ambit2.balloon.ShellBalloon
      - ambit2.balloon.ShellBalloonWeb
    - ambit2.smi23d.ShellMengine
    - ambit2.smi23d.ShellSmi2SDF
  - ambit2.some.SOMEShell
- ambit2.export.isa.v1_0.objects.Comment
- ambit2.reactions.cli.ComplexityCli
- java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
  - java.awt.Container
    - javax.swing.JComponent (implements java.io.Serializable)
      - javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
        
        javax.swing.table.DefaultTableCellRenderer (implements java.io.Serializable, javax.swing.table.TableCellRenderer)
        
        ambit2.ui.BrowserModeCellRenderer
        
        ambit2.ui.ColorTableCellRenderer
        
        ambit2.ui.NumberCellRenderer
        
        ambit2.ui.ImageCellRenderer (implements java.beans.PropertyChangeListener, javax.swing.table.TableCellRenderer)
      - javax.swing.JPanel (implements javax.accessibility.Accessible)
        
        ambit2.dbui.dictionary.AmbitRowsPanel<T,Rows> (implements ambit2.base.interfaces.IAmbitEditor<T>)
        
        ambit2.dbui.dictionary.TemplatePropertyPanel
        
        ambit2.ui.DelimitersPanel (implements java.awt.event.ItemListener, java.beans.PropertyChangeListener)
        
        ambit2.ui.editors.EditorPanel
        
        ambit2.ui.editors.FileSelector (implements java.awt.event.ActionListener, ambit2.base.interfaces.IAmbitEditor<T>)
        
        ambit2.ui.Panel2D<A> (implements java.awt.event.ComponentListener, ambit2.base.interfaces.IAmbitEditor<T>, org.openscience.cdk.event.ICDKChangeListener, java.beans.PropertyChangeListener)
        
        ambit2.ui.jmol.Panel3D (implements ambit2.base.interfaces.IAmbitEditor<T>, java.beans.PropertyChangeListener)
        
        ambit2.ui.QueryBrowser<T> (implements ambit2.base.interfaces.IAmbitEditor<T>, java.beans.PropertyChangeListener)
        
        ambit2.dbui.QueryInfoEditor (implements ambit2.base.interfaces.IAmbitEditor<T>)
        
        ambit2.ui.editors.SelectFieldsPanel (implements java.awt.event.ActionListener, ambit2.base.interfaces.IAmbitEditor<T>)
        
        ambit2.ui.WizardPanel
      - javax.swing.table.JTableHeader (implements javax.accessibility.Accessible, javax.swing.event.TableColumnModelListener)
        
        ambit2.ui.EditableHeader (implements javax.swing.event.CellEditorListener)
      - javax.swing.JToolBar (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
        
        ambit2.ui.AbstractPanel<T>
        
        ambit2.ui.table.BrowserModeNavigator
        
        ambit2.ui.table.FindNavigator
        
        ambit2.ui.table.PageNavigator
        
        ambit2.ui.table.RecordNavigator
    - java.awt.Window (implements javax.accessibility.Accessible)
      - java.awt.Dialog
        
        javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
        
        ambit2.jchempaint.editor.JChemPaintDialog
- ambit2.export.isa.v1_0.objects.Component
- ambit2.structure2name.components.ComponentConnection
- ambit2.smarts.ComponentMapping
- ambit2.reactions.mapping.ComponentRelationship
- javax.swing.plaf.ComponentUI
  - javax.swing.plaf.TableHeaderUI
    - javax.swing.plaf.basic.BasicTableHeaderUI
      - ambit2.ui.EditableHeaderUI
- ambit2.structure2name.components.ComponentUtils
- ambit2.rendering.CompoundImageTools (implements ambit2.core.io.ICompoundImageTools, ambit2.core.data.IStructureDiagramHighlights)
  - ambit2.db.readers.DbCompoundImageTools
- ambit2.rules.conditions.ConditionExpression (implements ambit2.rules.conditions.ICondition)
- ambit2.rules.conditions.parser.ConditionJsonParser
- ambit2.rules.conditions.parser.ConditionParsingUtils
- net.idea.modbcum.i.config.ConfigProperties
  - ambit2.base.config.AMBITConfigProperties
    - ambit2.rest.config.AMBITAppConfigProperties
      - ambit2.rest.config.AMBITAppConfigInternal
- ambit2.export.isa.v1_0.objects.Constituent
- ambit2.groupcontribution.utils.math.CrossValidation
- ambit2.rest.legacy.CSVFeatureValuesIterator<PROPERTY> (implements java.util.Iterator<E>)
- ambit2.descriptors.topological.CTIDescriptor
- ambit2.tautomers.tools.CustomTautomerFilters
- ambit2.tautomers.rules.CustomTautomerRegion
- ambit2.export.isa.v1_0.objects.Data
- ambit2.model.numeric.DataCoverage<DATA> (implements ambit2.model.numeric.IDataCoverage<DATA>)
  - ambit2.model.numeric.DataCoverageDescriptors
    - ambit2.model.numeric.DataCoverageDensity
    - ambit2.model.numeric.DataCoverageDistance
      - ambit2.model.numeric.distance.DataCoverageDistanceCityBlock
      - ambit2.model.numeric.distance.DataCoverageDistanceEuclidean
      - ambit2.model.numeric.distance.DataCoverageDistanceMahalanobis
  - ambit2.model.structure.DataCoverageFingerprints
    - ambit2.model.structure.DataCoverageFingeprintsMissingFragments
    - ambit2.model.structure.DataCoverageFingerprintsTanimoto
  - ambit2.model.numeric.DataCoverageLeverage
  - ambit2.model.numeric.DataCoverageLeverageHatMatrix
- ambit2.export.isa.v1_0.objects.DataFile
- ambit2.rest.DataResources
- ambit2.groupcontribution.dataset.DataSet
- ambit2.groupcontribution.dataset.DataSetObject
- ambit2.groupcontribution.dataset.DataSetObjectIterator (implements java.util.Iterator<E>)
- ambit2.groupcontribution.io.DataSetReader
- ambit2.rest.DBConnection
- net.idea.modbcum.p.DefaultAmbitProcessor<Target,Result> (implements net.idea.modbcum.i.processors.IProcessor<Target,Result>)
  - ambit2.base.ro.AbstractAnnotator<U,V>
    - ambit2.db.substance.study.facet.FacetAnnotator
    - ambit2.base.ro.SubstanceRecordAnnotationProcessor
  - net.idea.modbcum.p.AbstractDBProcessor<Target,Result> (implements net.idea.modbcum.i.IDBProcessor<Target,Result>)
    - net.idea.modbcum.p.batch.AbstractBatchProcessor<Target,ItemInput> (implements net.idea.modbcum.i.processors.IBatchProcessor<Target,ItemInput,Result>)
      - ambit2.db.processors.BatchDBProcessor<ITEMTYPE>
        
        ambit2.db.processors.QuickImportBatchProcessor
      - ambit2.db.processors.BatchStructuresListProcessor
      - ambit2.db.DbReader<ResultType> (implements net.idea.modbcum.i.IDBProcessor<Target,Result>)
        
        ambit2.db.DbReaderStructure
      - ambit2.rest.RDFBatchParser<Item>
        
        ambit2.rest.dataset.RDFInstancesParser
        
        ambit2.rest.dataset.RDFStructuresReader
    - ambit2.db.processors.AbstractDescriptorCalculator<INTERNAL>
      - ambit2.db.processors.DescriptorsCalculator (implements ambit2.core.data.IStructureDiagramHighlights)
    - ambit2.db.processors.AbstractRepositoryWriter<Target,Result>
      - ambit2.db.processors.AbstractPropertyWriter<Target,Result>
        
        ambit2.db.processors.DbDescriptorWriter
        
        ambit2.db.processors.ValueWriter<Target,Result>
        
        ambit2.db.processors.DbDescriptorValuesWriter
        
        ambit2.db.processors.PropertyValuesWriter
      - ambit2.db.processors.AbstractUpdateProcessor<Group,Target>
        
        ambit2.db.update.fpae.AtomEnvironmentMatrixWriter<S>
        
        ambit2.db.update.fpae.AtomEnvironmentWriter<S>
        
        ambit2.db.processors.quality.FPStructureWriter
        
        ambit2.db.update.chemical.InChIChemicalsWriter
        
        ambit2.db.update.qlabel.smarts.SMARTSAcceleratorWriter
      - ambit2.db.processors.DbCreateDatabase
      - ambit2.db.processors.DbStructureWriter
      - ambit2.db.processors.FP1024Writer
      - ambit2.db.search.structure.pairwise.PairPropertiesWriter
      - ambit2.db.processors.PropertyImporter
      - ambit2.db.processors.quality.QualityLabelWriter
      - ambit2.db.processors.quality.QualityValueWriter
      - ambit2.db.processors.RepositoryWriter
      - ambit2.db.processors.ValueWriterNew
    - ambit2.db.results.AmbitRows<T> (implements java.beans.PropertyChangeListener)
      - ambit2.db.results.DictionaryRows
      - ambit2.db.results.PropertyRows
      - ambit2.db.SourceDatasetRows<M>
    - ambit2.db.chart.ChartGenerator<T>
      - ambit2.db.chart.BarChartGenerator<T>
        
        ambit2.db.chart.BarChartGeneratorDataset
        
        ambit2.db.chart.HistogramChartGenerator
      - ambit2.db.chart.FingerprintHistogramDataset
      - ambit2.db.chart.FuncGroupsChartGenerator
      - ambit2.db.chart.Nominal2SimilarityChartGenerator
      - ambit2.db.chart.Numeric2SimilarityChartGenerator
      - ambit2.db.chart.PieChartGenerator<T>
      - ambit2.db.chart.PropertiesChartGenerator
      - ambit2.db.chart.XTabChartGenerator
    - ambit2.db.processors.ConnectionStatusProcessor<T>
      - ambit2.db.processors.ConnectionStatisticsProcessor<T>
        
        ambit2.db.processors.QualityStatisticsProcessor
        
        ambit2.db.processors.QueryStatisticsProcessor
        
        ambit2.db.processors.StructureStatisticsProcessor
    - ambit2.db.substance.processor.DBMatrixValueMarker
    - ambit2.db.substance.processor.DBSubstanceWriter
      - ambit2.db.substance.processor.DBBundleStudyWriter
    - net.idea.modbcum.p.MasterDetailsProcessor<Master,Detail,C>
      - ambit2.db.substance.study.SubstanceStudyDetailsProcessor
    - ambit2.rest.model.predictor.ModelPredictor<Predictor,NativeTypeItem> (implements ambit2.core.data.IStructureDiagramHighlights)
      - ambit2.rest.model.predictor.AbstractStructureProcessor<Predictor>
        
        ambit2.rest.model.predictor.Structure2DProcessor
        
        ambit2.rest.model.predictor.StructureProcessor
      - ambit2.rest.model.predictor.CoveragePredictor<Input,T>
        
        ambit2.rest.model.predictor.FingerprintsPredictor
        
        ambit2.rest.model.predictor.NumericADPredictor
      - ambit2.rest.model.predictor.DescriptorPredictor<C>
      - ambit2.rest.model.predictor.ExpertModelpredictor<Predictor>
      - ambit2.rest.model.predictor.ExternalModelPredictor<C>
      - ambit2.rest.task.weka.FilteredWekaPredictor<T>
      - ambit2.rest.task.weka.WekaPredictor<T>
    - ambit2.dbui.dictionary.OntologyEditor (implements ambit2.base.interfaces.IAmbitEditor<T>)
    - ambit2.db.processors.processorCloseSession
    - ambit2.db.processors.ProcessorCreateProfileQuery
    - ambit2.db.processors.ProcessorCreateQuery
    - ambit2.db.processors.ProcessorCreateSession
    - ambit2.db.processors.ProcessorOntology
    - ambit2.db.processors.ProcessorSetQueryScope
    - ambit2.db.search.structure.pairwise.ProcessorStructurePairsRetrieval
    - ambit2.db.processors.ProcessorStructureRetrieval
    - ambit2.dbui.ProfileEditor (implements ambit2.base.interfaces.IAmbitEditor<T>)
    - net.idea.modbcum.r.QueryAbstractReporter<T,Q,Output> (implements net.idea.modbcum.i.reporter.Reporter<Content,Output>)
      - ambit2.db.reporters.QueryPacketReporter<Q,Output>
      - net.idea.modbcum.r.QueryReporter<T,Q,Output>
        
        ambit2.db.reporters.AbstractImageReporter<Q,OUTPUT>
        
        ambit2.db.reporters.ImageAreaReporter<Q>
        
        ambit2.db.reporters.ImageReporter<Q>
        
        ambit2.db.reporters.QueryProperyReporter<Q,Output>
        
        ambit2.db.reporters.QueryTemplateReporter<Q>
        
        net.idea.restnet.db.convertors.QueryRDFReporter<T,Q>
        
        ambit2.rest.substance.SubstanceRDFReporter<Q>
        
        ambit2.rest.QueryStaXReporter<T,Q,R>
        
        ambit2.rest.dataset.DatasetRDFStaxReporter<Q>
        
        ambit2.rest.substance.SubstanceBundleStAXReporter
        
        ambit2.db.reporters.QueryStructureReporter<Q,Output>
        
        ambit2.db.reporters.AbstractStructureRecordReporter<Result>
        
        ambit2.db.reporters.StructureListReporter
        
        ambit2.db.reporters.StructureRecordReporter
        
        ambit2.db.reporters.CMLReporter<Q>
        
        ambit2.db.reporters.QueryHeaderReporter<Q,Output>
        
        ambit2.db.reporters.xlsx.AbstractXLSXReporter<Q>
        
        ambit2.db.reporters.xlsx.StructureRecordXLSXReporter<Q>
        
        ambit2.db.reporters.xlsx.SubstanceRecordXLSXReporter<Q> (implements ambit2.core.io.study.IStudyPrinter)
        
        ambit2.db.reporters.ARFFReporter<Q>
        
        ambit2.db.reporters.ARFF3ColReporter<Q>
        
        ambit2.db.reporters.CSVReporter<Q>
        
        ambit2.db.reporters.PDFReporter<Q>
        
        ambit2.db.reporters.RTFReporter<Q>
        
        ambit2.db.reporters.SDFReporter<Q>
        
        ambit2.db.reporters.SmilesReporter<Q>
        
        net.idea.restnet.db.QueryURIReporter<T,Q>
        
        ambit2.rest.structure.CompoundURIReporter<Q>
        
        ambit2.rest.structure.ConformerURIReporter<Q>
        
        ambit2.rest.dataset.DatasetURIReporter<Q,M>
        
        ambit2.rest.model.ModelURIReporter<Q>
        
        ambit2.rest.property.PropertyURIReporter
        
        ambit2.rest.substance.SubstanceURIReporter<Q>
    - ambit2.dbui.QueryCombinedEditor (implements ambit2.base.interfaces.IAmbitEditor<T>)
    - ambit2.dbui.QueryEditor<F,T,C,ResultType,Q> (implements ambit2.base.interfaces.IAmbitEditor<T>)
      - ambit2.dbui.dictionary.DictionaryQueryPanel
      - ambit2.dbui.QueryChemicalEditor
      - ambit2.dbui.QueryDatasetEditor
      - ambit2.dbui.QueryFieldEditor
      - ambit2.dbui.QueryFieldNumericEditor
      - ambit2.dbui.QueryFunctionalGroupsEditor
      - ambit2.dbui.QuerySimilarityEditor
      - ambit2.dbui.QuerySmartsEditor
      - ambit2.dbui.QueryStoredResultsEditor
      - ambit2.dbui.QueryStructureByQualityEditor
      - ambit2.dbui.QueryStructureByValueQualityEditor
    - ambit2.db.processors.QueryInfo2Query
    - ambit2.dbui.QueryScopeEditor (implements ambit2.base.interfaces.IAmbitEditor<T>)
    - ambit2.rest.dataset.RDFFileWriter
    - ambit2.db.RepositoryReader<Target>
    - ambit2.db.StatementExecutor<Q,Results>
      - ambit2.db.PreparedStatementBatchExecutor<Q>
      - ambit2.db.search.QueryExecutor<Q>
      - ambit2.db.UpdateExecutor<Q>
    - ambit2.db.readers.ValuesByTemplateReader<Result>
      - ambit2.db.search.property.ValuesReader
  - ambit2.descriptors.processors.AbstractDescriptorCalculationProcessor<ITEM,DESCRIPTOR>
    - ambit2.descriptors.processors.DescriptorCalculationProcessor (implements ambit2.core.data.IStructureDiagramHighlights)
      - ambit2.descriptors.processors.PropertyCalculationProcessor
  - ambit2.descriptors.processors.AbstractDescriptorFactory<Result>
    - ambit2.descriptors.processors.DescriptorsFactory
  - ambit2.base.processors.search.AbstractFinder<REQUEST,RESULT>
    - ambit2.search.AllSourcesFinder
    - ambit2.chebi.ChebiFinder
    - ambit2.namestructure.Name2StructureFinder
    - ambit2.pubchem.PubchemFinder
    - ambit2.pubchem.rest.PubChemRestFinder
  - ambit2.model.builder.AbstractModelBuilder<DATA,A,Model>
    - ambit2.rest.model.builder.ModelBuilder<DATA,A,Model>
      - ambit2.rest.model.builder.AbstractStructuresModelBuilder<DATA>
        
        ambit2.rest.model.builder.SMSDModelBuilder
      - ambit2.rest.model.builder.CoverageModelBuilder
      - ambit2.rest.task.weka.FilteredWekaModelBuilder
      - ambit2.rest.model.builder.FingerprintsModelBuilder
      - ambit2.rest.model.builder.SimpleModelBuilder
        
        ambit2.rest.model.builder.ExpertModelBuilder
      - ambit2.rest.task.weka.WekaModelBuilder
  - ambit2.core.processors.structure.AbstractPropertyGenerator<P>
    - ambit2.descriptors.processors.AtomEnvironmentGenerator
    - ambit2.descriptors.processors.AtomEnvironmentMatrixGenerator
    - ambit2.descriptors.processors.BitSetGenerator
    - ambit2.smarts.processors.SMARTSPropertiesGenerator
  - net.idea.modbcum.r.AbstractRepresentationConvertor<Item,Content,Output,R,Media,ItemReporter>
    - net.idea.restnet.c.RepresentationConvertor<Item,Content,Output,R>
      - ambit2.rest.StreamConvertor<T,Q,R>
  - ambit2.search.chemidplus.AbstractSearchRequest<R>
    - ambit2.search.chemidplus.ChemIdPlusRequest
    - ambit2.search.csls.CSLSRequest<R>
      - ambit2.search.csls.CSLSImageRequest
      - ambit2.search.csls.CSLSStringRequest
    - ambit2.search.opentox.OpenToxRequest
    - ambit2.pubchem.rest.PUGRestRequest<R>
      - ambit2.pubchem.rest.PUGRestCompoundRequest
      - ambit2.pubchem.rest.PUGRestImageRequest
  - ambit2.rest.dataset.AbstractStaxRDFWriter<INPUT,OUTPUT>
    - ambit2.rest.dataset.DatasetRDFWriter
    - ambit2.rest.substance.SubstanceRecordStaxWriter
  - ambit2.core.processors.structure.AtomConfigurator
    - ambit2.core.processors.structure.HydrogenAdderProcessor
  - ambit2.core.data.distances.AtomDistanceProcessor
  - ambit2.base.processors.batch.BatchProcessor<INPUT,Target> (implements ambit2.base.interfaces.IBatchProcessor<Target,ItemInput,Result>)
  - ambit2.base.processors.batch.BatchReporter<Item,ItemList,Output> (implements net.idea.modbcum.i.reporter.Reporter<Content,Output>)
    - ambit2.base.processors.batch.ListReporter<Item,Output>
      - ambit2.rest.reporters.CatalogRDFReporter<T>
        
        ambit2.rest.reporters.TaskRDFReporter<USERID>
      - ambit2.rest.reporters.CatalogURIReporter<T>
        
        ambit2.rest.algorithm.AlgorithmURIReporter
        
        ambit2.rest.reporters.TaskURIReporter<USERID>
        
        ambit2.rest.task.TaskJSONReporter<USERID>
  - ambit2.pubchem.BatchRetrievePubChem
  - ambit2.rest.study.BucketJson2CSVConvertor
  - ambit2.base.processors.CASProcessor
  - ambit2.core.processors.quality.ChemicalStructureQualityCheck
  - ambit2.core.processors.structure.CloneProcessor
  - ambit2.pubchem.DepictRequest
  - ambit2.descriptors.processors.DescriptorEngineProcessor
  - ambit2.descriptors.processors.DescriptorResultFormatter
  - ambit2.descriptors.processors.DescriptorValue2Property
  - ambit2.core.io.dx.DXParser
  - ambit2.core.processors.structure.key.EmptyKey (implements ambit2.core.processors.structure.key.IStructureKey<Target,Result>)
  - ambit2.pubchem.EntrezESearchParser
  - ambit2.core.processors.structure.FingerprintGenerator<FGenerator>
  - ambit2.descriptors.FuncGroupsDescriptorFactory
  - ambit2.pubchem.HTTPRequest<Target,Result>
    - ambit2.pubchem.EntrezSearchProcessor
    - ambit2.pubchem.NCISearchProcessor
  - ambit2.ui.jmol.ImageTools3D
  - ambit2.core.processors.structure.key.InchiKey (implements ambit2.core.processors.structure.key.IStructureKey<Target,Result>)
  - ambit2.core.processors.structure.InchiProcessor
  - ambit2.core.processors.structure.MoleculePairProcessor
  - ambit2.core.processors.structure.MoleculeReader
  - ambit2.core.processors.structure.MoleculeWriter
  - ambit2.namestructure.Name2StructureProcessor
  - ambit2.db.processors.ProcessorCloseReader
  - ambit2.db.processors.ProcessorFile2FileReader
  - ambit2.core.processors.ProcessorFileExport<Content> (implements net.idea.modbcum.i.reporter.Reporter<Content,Output>)
  - ambit2.core.processors.structure.key.PropertyKey<Result> (implements ambit2.core.processors.structure.key.IStructureKey<Target,Result>)
    - ambit2.core.processors.structure.key.CASKey
    - ambit2.core.processors.structure.key.ChEMBLCompoundURI
    - ambit2.core.processors.structure.key.DSSToxID
      - ambit2.core.processors.structure.key.DSSToxCID
      - ambit2.core.processors.structure.key.DSSToxGenericSID
      - ambit2.core.processors.structure.key.DSSToxRID
    - ambit2.core.processors.structure.key.EINECSKey
    - ambit2.core.processors.structure.key.InchiPropertyKey
    - ambit2.core.processors.structure.key.NameKey
    - ambit2.core.processors.structure.key.NoneKey
    - ambit2.core.processors.structure.key.PropertyNameKey
      - ambit2.core.processors.structure.key.SampleKey
    - ambit2.core.processors.structure.key.PubchemCID
    - ambit2.core.processors.structure.key.PubchemSID
    - ambit2.core.processors.structure.key.ReferenceSubstanceUUID
  - ambit2.pubchem.PUGProcessor
  - ambit2.rest.RemoteStreamConvertor
  - ambit2.smarts.processors.SMARTSPropertiesReader
  - ambit2.smarts.SmartsToChemObject
  - ambit2.core.processors.structure.key.SmilesKey (implements ambit2.core.processors.structure.key.IStructureKey<Target,Result>)
  - ambit2.core.processors.Structure2DBuilder
  - ambit2.rendering.StructureEditorProcessor
  - ambit2.smarts.processors.StructureKeysBitSetGenerator
  - ambit2.core.processors.StructureNormalizer
  - ambit2.base.processors.StructureRecordsAppender
  - ambit2.base.data.study.StructureRecordValidator
  - ambit2.tautomers.processor.StructureStandardizer
  - ambit2.core.processors.structure.StructureTypeProcessor
  - ambit2.tautomers.processor.TautomerProcessor
- ambit2.reactions.fragmentation.DefaultFragmentationRules
- ambit2.core.processors.batch.DefaultIOState (implements ambit2.base.interfaces.IInputOutputState)
  - ambit2.core.processors.batch.DefaultInputState (implements ambit2.core.io.IInputState)
- ambit2.core.io.DelimitedFileFormat (implements org.openscience.cdk.io.formats.IChemFormatMatcher)
  - ambit2.core.io.ToxcastFileFormat
- ambit2.groupcontribution.correctionfactors.DescriptorCorrectionFactor (implements ambit2.groupcontribution.correctionfactors.ICorrectionFactor)
- ambit2.dragon.DescriptorDragonShell (implements org.openscience.cdk.qsar.IMolecularDescriptor)
- ambit2.rules.conditions.DescriptorExpression (implements ambit2.rules.conditions.ICondition)
- ambit2.groupcontribution.correctionfactors.DescriptorInfo
- ambit2.mopac.DescriptorMopacShell (implements org.openscience.cdk.qsar.IMolecularDescriptor)
  - ambit2.mopac.MopacOriginalStructure
- ambit2.reactions.generator.score.components.DescriptorRangeScore (implements ambit2.reactions.generator.score.IScoreComponent)
- ambit2.rules.conditions.DescriptorSolverSet (implements ambit2.rules.conditions.IDescriptorSolver)
- ambit2.some.DescriptorSOMEShell (implements org.openscience.cdk.qsar.IMolecularDescriptor, ambit2.core.data.IStructureDiagramHighlights)
- ambit2.rules.conditions.DescriptorValueCondition (implements ambit2.rules.conditions.IDescriptorValueCondition, ambit2.rules.conditions.INeedsDescriptorSolver)
- ambit2.rules.weight.DescriptorWeight
- ambit2.similarity.measure.DistanceComparable<T> (implements java.lang.Comparable<T>)
- ambit2.model.dataset.DoubleArrayDataset (implements ambit2.model.IDataset<ID,Features,ResultType>)
- ambit2.smarts.DoubleBondStereoInfo
- ambit2.base.io.DownloadTool
- ambit2.dragon.DragonDescriptorDictionary
- ambit2.descriptors.topological.EccentricBasedMadanIndicesDescriptor (implements org.openscience.cdk.qsar.IMolecularDescriptor)
- ambit2.ui.EditorPreferences
- ambit2.base.data.study.EffectRecord<ENDPOINT,CONDITIONS,UNIT> (implements net.idea.modbcum.i.JSONSerializable, java.io.Serializable)
  - ambit2.base.data.study.ProtocolEffectRecord<ENDPOINT,CONDITIONS,UNIT>
    - ambit2.base.data.study.ProtocolEffectRecordMatrix<ENDPOINT,CONDITIONS,UNIT>
- ambit2.core.data.EINECS
- ambit2.tautomers.rules.EnergyCorrection
- ambit2.tautomers.ranking.EnergyRanking
- ambit2.tautomers.rules.EnergyRule
- ambit2.pubchem.EntrezSearchOptions
- ambit2.smarts.EquivalenceTester
- ambit2.similarity.measure.EuclideanDistance (implements ambit2.similarity.measure.IDistanceFunction<T>)
- ambit2.model.evaluation.EvaluationStats<Content> (implements ambit2.core.data.model.IEvaluation<Content>)
- java.util.EventObject (implements java.io.Serializable)
  - java.beans.PropertyChangeEvent
    - ambit2.db.results.QueryChangeEvent<T>
- ambit2.smarts.ExtendedChiralityInfo
- ambit2.export.isa.base.ExternalDataFileHeader
- ambit2.export.isa.base.ExternalDataFileLocation
- ambit2.export.isa.base.ExternalDataFileManager
- ambit2.base.data.substance.ExternalIdentifier
- ambit2.rest.model.predictor.ExternalModel<M,OUTPUT> (implements ambit2.core.data.IObject2Properties<D>)
  - ambit2.vega.ExternalModelVega
- ambit2.export.isa.v1_0.objects.Factor
- ambit2.export.isa.v1_0.objects.FactorValue
- net.idea.restnet.c.task.FactoryTaskConvertor<USERID>
  - ambit2.rest.task.FactoryTaskConvertor<USERID>
- ambit2.domain.stats.transforms.FFT
- javax.swing.filechooser.FileFilter
  - ambit2.base.io.AmbitFileFilter
  - ambit2.base.io.MolFileFilter
- ambit2.core.io.FileState (implements ambit2.base.interfaces.IInputOutputState)
  - ambit2.core.io.FileInputState (implements ambit2.core.io.IInputState)
  - ambit2.core.io.FileOutputState (implements ambit2.core.io.IOutputState)
- ambit2.tautomers.Filter
- ambit2.db.search.property.FilteredCount<T> (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.search.property.FilteredCountNominal
  - ambit2.db.search.property.FilteredCountNumeric
- ambit2.core.groups.FilteredList<T> (implements ambit2.core.groups.IFiltered<T>, java.util.List<E>)
- ambit2.rest.task.FilteredTasksIterator<USERID> (implements java.util.Iterator<E>)
- ambit2.tautomers.FilterTautomers
- ambit2.db.update.fp.Fingerprint<Type,Content> (implements ambit2.db.update.fp.IFingerprint<Type,Content>)
- ambit2.descriptors.fingerprints.Fingerprint2DescriptorWrapper (implements org.openscience.cdk.qsar.IMolecularDescriptor)
  - ambit2.descriptors.fingerprints.EStateFingerprinterWrapper
  - ambit2.descriptors.fingerprints.ExtendedFingerprinterWrapper
  - ambit2.descriptors.fingerprints.HybridizationFingerprinterWrapper
  - ambit2.descriptors.fingerprints.KlekotaRothFingerprinterWrapper
  - ambit2.descriptors.fingerprints.MACCSFingerprinterWrapper
  - ambit2.descriptors.fingerprints.PubChemFingerprinterWrapper
  - ambit2.descriptors.fingerprints.SubstructureFingerprinterWrapper
- ambit2.similarity.measure.FingerprintDistance (implements ambit2.similarity.measure.IDistanceFunction<T>)
- ambit2.groupcontribution.fragmentation.Fragmentation
- ambit2.reactions.fragmentation.Fragmentation
- ambit2.reactions.fragmentation.FragmentationRule
- ambit2.rest.freemarker.FreeMarkerSupport (implements net.idea.restnet.i.freemarker.IFreeMarkerSupport)
- ambit2.structure2name.rules.FunctionalGroupData
- ambit2.descriptors.FunctionalGroupDescriptor (implements org.openscience.cdk.qsar.IMolecularDescriptor)
- java.util.concurrent.FutureTask<V> (implements java.util.concurrent.RunnableFuture<V>)
  - ambit2.rest.task.ExecutableTask<USERID>
- ambit2.groupcontribution.io.GCM2Json
- ambit2.groupcontribution.io.GCM2Properties
- ambit2.groupcontribution.GCMParser
- ambit2.groupcontribution.cli.GCMPredictCli
- ambit2.groupcontribution.GCMReportConfig
- ambit2.groupcontribution.GCMTestConfig
- ambit2.reactions.rules.GenericParserUtils
- ambit2.reactions.GenericReaction
- ambit2.reactions.GenericReactionInstance
- ambit2.reactions.rules.GenericRuleMetaInfo
- ambit2.descriptors.utils.GraphMatrices
- ambit2.groupcontribution.cli.GroupContributionCli
- ambit2.groupcontribution.GroupContributionModel
- ambit2.groupcontribution.GroupContributionModel.GCMConfigInfo
- ambit2.groupcontribution.groups.GroupInfo
- ambit2.smarts.groups.GroupMatch
- ambit2.similarity.measure.HammingDistance (implements ambit2.similarity.measure.IDistanceFunction<T>)
- ambit2.core.data.HashDescriptorResult<V> (implements org.openscience.cdk.qsar.result.IDescriptorResult)
  - ambit2.core.data.HashIntDescriptorResult (implements org.openscience.cdk.fingerprint.IFingerprinter)
- ambit2.groupcontribution.nmr.nmr_1h.HAtomEnvironment
- ambit2.groupcontribution.nmr.nmr_1h.HAtomEnvironmentInstance
- ambit2.smarts.smirks.HAtomManager
- ambit2.groupcontribution.nmr.nmr_1h.HNMRKnowledgeBase
- ambit2.groupcontribution.nmr.nmr_1h.HNMRPredefinedKnowledgeBase
- ambit2.groupcontribution.cli.HNMRPredictCli
- ambit2.groupcontribution.nmr.HNMRShifts
- ambit2.groupcontribution.nmr.nmr_1h.HShift
- ambit2.base.ro.I5CONSTANTS
- ambit2.base.data.I5Utils
- ambit2.descriptors.InChI (implements org.openscience.cdk.qsar.IMolecularDescriptor)
- ambit2.export.isa.v1_0.objects.IntendedApplication
- ambit2.core.filter.IntPropertyIntervalCondition (implements ambit2.core.filter.IMoleculeFilterCondition)
- ambit2.export.isa.v1_0.objects.Investigation
- org.openscience.cdk.io.setting.IOSetting (implements org.openscience.cdk.interfaces.ISetting)
  - ambit2.core.io.MolPropertiesIOSetting
- ambit2.reactions.retrosynth.IReactionSequenceHandler.RSEvent
- ambit2.export.isa.base.ISAConst
- ambit2.export.isa.ISAExportConfig
  - ambit2.export.isa.json.ISAJsonExportConfig
- ambit2.export.isa.json.ISAJsonConst
- ambit2.export.isa.json.ISAJsonExporter (implements ambit2.export.isa.IISAExport)
- ambit2.export.isa.v1_0.ISAJsonExporter1_0 (implements ambit2.export.isa.IISAExport, net.idea.modbcum.i.reporter.Reporter<Content,Output>)
- ambit2.export.isa.v1_0.ISAJsonMapper1_0 (implements ambit2.export.isa.base.IISADataMapper)
- ambit2.export.isa.v1_0.ISAJsonUtils1_0
- ambit2.export.isa.base.ISALocation
- ambit2.export.isa.tab.ISATABConst
- ambit2.smarts.IsomorphismTester
- ambit2.descriptors.IsotopeFactory
- ambit2.core.io.IteratingFileReader (implements org.openscience.cdk.io.iterator.IIteratingChemObjectReader<T>)
- ambit2.structure2name.IUPACNameGenerator
- ambit2.structure2name.rules.IUPACRuleDataBase
- org.jmol.api.JmolAdapter
  - ambit2.ui.jmol.CdkJmolAdapter
- org.jmol.api.JmolAdapter.StructureIterator
  - ambit2.ui.jmol.CdkJmolAdapter.StructureIterator
- ambit2.core.json.JSONParserUtils
- ambit2.rules.json.JSONParsingUtils
- ambit2.tautomers.rules.JsonRuleParser
- ambit2.structure2name.rules.parser.JSONRuleParser
- ambit2.base.json.JSONUtils
- ambit2.domain.stats.transforms.densityestimation.KDensity1D (implements java.io.Serializable)
- ambit2.domain.stats.transforms.densityestimation.KDensityMD (implements ambit2.domain.stats.transforms.densityestimation.DrawableDensity, ambit2.domain.stats.transforms.densityestimation.HighestDensityRegions)
  - ambit2.domain.stats.transforms.densityestimation.KDensityMDProduct
- ambit2.domain.stats.transforms.densityestimation.Kernel (implements java.io.Serializable)
  - ambit2.domain.stats.transforms.densityestimation.KCEpanechnikov
  - ambit2.domain.stats.transforms.densityestimation.KLaplacian
  - ambit2.domain.stats.transforms.densityestimation.KNormal
- ambit2.reactions.generator.score.components.KnimeWorkflowScore (implements ambit2.reactions.generator.score.IScoreComponent)
- ambit2.tautomers.KnowledgeBase
- ambit2.groupcontribution.descriptors.LDAtomFormalCharge (implements ambit2.groupcontribution.descriptors.ILocalDescriptor)
- ambit2.groupcontribution.descriptors.LDAtomHeavyNeighbours (implements ambit2.groupcontribution.descriptors.ILocalDescriptor)
- ambit2.groupcontribution.descriptors.LDAtomHybridization (implements ambit2.groupcontribution.descriptors.ILocalDescriptor)
- ambit2.groupcontribution.descriptors.LDAtomSymbol (implements ambit2.groupcontribution.descriptors.ILocalDescriptor)
- ambit2.groupcontribution.descriptors.LDAtomValency (implements ambit2.groupcontribution.descriptors.ILocalDescriptor)
- ambit2.groupcontribution.descriptors.LDHNum (implements ambit2.groupcontribution.descriptors.ILocalDescriptor)
- ambit2.groupcontribution.Learner
- ambit2.similarity.measure.LevensteinDistance (implements ambit2.similarity.measure.IDistanceFunction<T>)
- ambit2.rules.functions.LinearFunction (implements ambit2.rules.functions.IFunction)
- ambit2.export.isa.v1_0.objects.Linkage
- ambit2.ui.editors.ListEditor (implements ambit2.base.interfaces.IAmbitEditor<T>)
- ambit2.groupcontribution.descriptors.LocalDescriptorManager
- ambit2.groupcontribution.dataset.LocalProperties
- ambit2.groupcontribution.dataset.LocalPropertiesIterator (implements java.util.Iterator<E>)
- ambit2.db.LoginInfo
- ambit2.smarts.MappingUtils
- ambit2.markush.Markush2Smarts
- ambit2.markush.MarkushHelpers
- ambit2.export.isa.v1_0.objects.Material
- ambit2.export.isa.v1_0.objects.MaterialAttribute
- ambit2.export.isa.v1_0.objects.MaterialAttributeValue
- ambit2.export.isa.v1_0.objects.Materials
- ambit2.export.isa.v1_0.objects.Materials_
- ambit2.groupcontribution.utils.math.MathUtilities
- ambit2.groupcontribution.utils.math.MatrixDouble
- ambit2.base.io.format.MatrixMarketReaderAbstract<T,V>
- ambit2.export.isa.v1_0.objects.McmMaterial
- ambit2.export.isa.v1_0.objects.McmType
- ambit2.similarity.measure.MCSSDistance (implements ambit2.similarity.measure.IDistanceFunction<T>)
- ambit2.domain.stats.transforms.Misc
- ambit2.rest.algorithm.MLResources
- ambit2.reactions.mmp.analysis.MMPAnalysis
- com.jgoodies.binding.beans.Model (implements com.jgoodies.binding.beans.Observable, java.io.Serializable)
  - ambit2.dbui.LoginInfoBean
- ambit2.groupcontribution.io.ModelReader
- ambit2.similarity.stats.ModelValuesHistogram<T,U> (implements ambit2.similarity.stats.IModelHistogram<U>, ambit2.model.IModelStatistics<ResultType>)
  - ambit2.similarity.stats.DoubleValuesHistogram<U>
    - ambit2.similarity.stats.AbstractModelStatistics<U>
      - ambit2.similarity.stats.ClassificationModelStatistics<U>
      - ambit2.similarity.stats.PredictionModelStatistics<U>
  - ambit2.similarity.stats.StringValuesHistogram
- ambit2.core.data.model.ModelWrapper<T,TrainingInstances,TestInstances,Content,EVCONTENT> (implements java.io.Serializable)
  - ambit2.core.data.model.ModelQueryResults
- ambit2.groupcontribution.io.ModelWriter
- ambit2.reactions.rules.scores.MolecularComplexity
- ambit2.descriptors.MolecularWeight (implements org.openscience.cdk.qsar.IMolecularDescriptor)
  - ambit2.descriptors.constitutional.DerivedMolecularWeightDescriptor
    - ambit2.descriptors.constitutional.AverageMolecularWeightDescriptor
    - ambit2.descriptors.constitutional.CubicRootMolecularWeightDescriptor
    - ambit2.descriptors.constitutional.SquareRootMolecularWeightDescriptor
- ambit2.structure2name.components.MoleculeAnalysis
- ambit2.core.filter.MoleculeFilter
- ambit2.core.data.MoleculeTools
- ambit2.groupcontribution.utils.MoleculeUtils
- ambit2.mopac.MopacUtilities
- ambit2.similarity.stats.MutableInt
- ambit2.base.io.MyIOUtilities
- ambit2.structure2name.helpers.NameUtils
- ambit2.rules.functions.NestedFunctions (implements ambit2.rules.functions.IFunction)
- ambit2.smarts.Node
- ambit2.reactions.retrosynth.NodeComponent
- ambit2.smarts.NodeExplorer
- ambit2.reactions.mmp.analysis.NonAdditivityAnalysis
- ambit2.export.isa.v1_0.ObjectUtils
- ambit2.export.isa.v1_0.objects.OntologyAnnotation
- ambit2.export.isa.v1_0.OntologyManager1_0
- ambit2.export.isa.v1_0.objects.OntologySourceReference
- ambit2.rest.aa.opensso.OpenSSOServicesConfig
- ambit2.rest.OpenTox
- ambit2.export.isa.v1_0.objects.Organization
- ambit2.rest.rdf.OTA
- ambit2.rest.rdf.OTEE
- ambit2.rest.legacy.OTFibonacciSequence
- ambit2.rest.legacy.OTObject (implements java.lang.Comparable<T>, ambit2.rest.legacy.IOTObject)
  - ambit2.rest.legacy.OTCompound
  - ambit2.rest.legacy.OTDataset (implements ambit2.rest.legacy.IOTDataset)
  - ambit2.rest.task.dsl.OTDatasetComparisonReport
  - ambit2.rest.task.dsl.OTDatasetRDFReport
  - ambit2.rest.task.dsl.OTDatasetReport
    - ambit2.rest.task.dsl.OTDatasetScrollableReport
    - ambit2.rest.task.dsl.OTDatasetTableReport
  - ambit2.rest.legacy.OTOntologyService<Z>
  - ambit2.rest.legacy.OTProcessingResource
    - ambit2.rest.legacy.OTAlgorithm (implements ambit2.rest.legacy.IOTAlgorithm)
    - ambit2.rest.legacy.OTContainers<T>
      - ambit2.rest.legacy.OTDatasets
      - ambit2.rest.legacy.OTProcessingContainers<T>
        
        ambit2.rest.legacy.OTAlgorithms
        
        ambit2.rest.legacy.OTFeatures
    - ambit2.rest.legacy.OTFeature
    - ambit2.rest.legacy.OTModel (implements ambit2.rest.legacy.IOTModel)
      - ambit2.rest.legacy.OTSuperModel
- ambit2.rest.legacy.OTRemoteTask (implements java.io.Serializable)
- ambit2.rest.legacy.OTRemoteTaskPool
- ambit2.ml.io.OutputARFF (implements ambit2.ml.io.IMLOutput<V>)
- ambit2.ml.io.OutputVW (implements ambit2.ml.io.IMLOutput<V>)
- ambit2.ml.io.OutputVW_LDA (implements ambit2.ml.io.IMLOutput<V>)
- ambit2.core.data.model.Parameter<T>
- ambit2.base.data.study.Params<VALUE> (implements ambit2.base.data.study.IParams<VALUE>)
  - ambit2.base.data.study.ModelParams
  - ambit2.base.data.study.ReliabilityParams<VALUE>
- ambit2.export.isa.v1_0.objects.Person
- ambit2.tautomers.zwitterion.PhosphoricGroup (implements ambit2.tautomers.zwitterion.IAcidicCenter)
- ambit2.descriptors.PKANode
- ambit2.descriptors.PKASmartsDescriptor (implements org.openscience.cdk.qsar.IMolecularDescriptor)
- ambit2.tautomers.PredefinedKnowledgeBase
- ambit2.reactions.retrosynth.PredefinedReactionKnowledgeBase
- ambit2.sln.dictionary.PredefinedSLNDictionary
- ambit2.base.config.Preferences
- ambit2.ui.editors.PreferencesPanel (implements ambit2.base.interfaces.IAmbitEditor<T>)
- ambit2.export.isa.v1_0.objects.Process
- ambit2.db.search.structure.ProcessorMissingDescriptorsQuery
- ambit2.export.isa.v1_0.objects.ProcessParameterValue
- ambit2.base.data.Profile<P> (implements java.io.Serializable)
  - ambit2.base.data.Template
    - ambit2.base.data.Endpoints
    - ambit2.base.data.PredictedVarsTemplate
- ambit2.base.data.Property (implements java.lang.Comparable<T>, java.io.Serializable)
  - ambit2.base.data.Dictionary
  - ambit2.core.processors.structure.key.NameOnlyProperty
  - ambit2.base.data.substance.SubstanceName
  - ambit2.base.data.substance.SubstanceOwner
  - ambit2.base.data.substance.SubstanceProperty
    - ambit2.base.data.substance.SubstancePropertyCategory
  - ambit2.base.data.substance.SubstancePublicName
  - ambit2.base.data.substance.SubstanceUUID
- ambit2.base.data.PropertyAnnotation<OBJECT> (implements java.io.Serializable)
- ambit2.base.data.PropertyStats<T>
  - ambit2.base.data.PropertyTemplateStats
- ambit2.db.readers.PropertyValue<T> (implements java.io.Serializable)
- ambit2.base.relation.composition.Proportion (implements java.io.Serializable)
- ambit2.base.data.study.Protocol
- ambit2.export.isa.v1_0.objects.Protocol
- ambit2.base.data.study.ProtocolApplication<PROTOCOL,PARAMS,ENDPOINT,CONDITIONS,UNIT> (implements java.io.Serializable)
  - ambit2.base.data.study.ProtocolApplicationAnnotated<PROTOCOL,PARAMS,ENDPOINT,CONDITIONS,UNIT>
- ambit2.core.io.study.ProtocolEffectRecord2SubstanceProperty (implements net.idea.modbcum.i.processors.IProcessor<Target,Result>)
- ambit2.export.isa.v1_0.objects.ProtocolParameter
- ambit2.descriptors.fingerprints.PubChemFingerprinter
- ambit2.descriptors.fingerprints.PubChemFingerprinterAmbitSmarts (implements org.openscience.cdk.fingerprint.IFingerprinter)
- ambit2.export.isa.v1_0.objects.Publication
- ambit2.db.simiparity.space.QMap<P> (implements java.io.Serializable)
- ambit2.db.simiparity.space.QMapSpace (implements java.io.Serializable)
- org.openscience.cdk.isomorphism.matchers.QueryChemObject (implements org.openscience.cdk.interfaces.IChemObject)
  - org.openscience.cdk.isomorphism.matchers.QueryAtom (implements org.openscience.cdk.isomorphism.matchers.IQueryAtom)
    - org.openscience.cdk.isomorphism.matchers.smarts.SMARTSAtom (implements org.openscience.cdk.isomorphism.matchers.IQueryAtom)
      - ambit2.smarts.AliphaticSymbolQueryAtom
      - ambit2.smarts.AromaticSymbolQueryAtom
      - ambit2.sln.SLNAtom
      - ambit2.smarts.SmartsAtomExpression
      - ambit2.smarts.SymbolQueryAtomAromaticityNotSpecified
  - org.openscience.cdk.isomorphism.matchers.QueryAtomContainer (implements org.openscience.cdk.isomorphism.matchers.IQueryAtomContainer)
    - ambit2.sln.SLNContainer
  - org.openscience.cdk.isomorphism.matchers.QueryBond (implements org.openscience.cdk.isomorphism.matchers.IQueryBond)
    - org.openscience.cdk.isomorphism.matchers.smarts.SMARTSBond (implements org.openscience.cdk.isomorphism.matchers.IQueryBond)
      - ambit2.smarts.DoubleBondAromaticityNotSpecified
      - ambit2.smarts.DoubleNonAromaticBond
      - ambit2.smarts.RingQueryBond
      - ambit2.smarts.SingleBondAromaticityNotSpecified
      - ambit2.smarts.SingleNonAromaticBond
      - ambit2.smarts.SingleOrAromaticBond
      - ambit2.sln.SLNBond
      - ambit2.smarts.SmartsBondExpression
      - ambit2.smarts.TripleBondAromaticityNotSpecified
- ambit2.db.search.QueryCombined<T> (implements net.idea.modbcum.i.IQueryRetrieval<ResultType>)
  - ambit2.db.search.structure.QueryCombinedStructure
    - ambit2.db.search.structure.QueryComplement
- ambit2.db.search.QueryInfo
- ambit2.smarts.QuerySequenceElement
- ambit2.pubchem.QuerySupport<Target,Result>
- ambit2.core.io.QuotedTokenizer
- ambit2.base.data.Range<T>
- ambit2.reactions.generator.score.components.RangeProfile
- ambit2.tautomers.RankingRule
- ambit2.core.io.RawIteratingWrapper<R> (implements ambit2.base.interfaces.ICiteable, ambit2.core.io.IRawReader<T>)
- ambit2.rest.rdf.RDFObjectIterator<Item> (implements java.util.Iterator<E>)
  - ambit2.rest.rdf.RDFAlgorithmIterator
  - ambit2.rest.rdf.RDFBookmarkIterator
  - ambit2.rest.rdf.RDFDataEntryIterator<Item,Feature>
    - ambit2.rest.rdf.RDFInstancesIterator
    - ambit2.rest.rdf.RDFStructuresIterator
  - ambit2.rest.rdf.RDFMetaDatasetIterator<M>
  - ambit2.rest.rdf.RDFModelIterator<T,TrainingInstances,TestInstances,Content>
  - ambit2.rest.rdf.RDFPropertyIterator
  - ambit2.rest.rdf.RDFReferenceIterator
  - ambit2.rest.rdf.RDFResourceIterator
- ambit2.rest.rdf.sparql.RDFSparqlIterator<Item> (implements java.util.Iterator<E>)
  - ambit2.rest.rdf.sparql.RDFAbstractCompoundIterator<COMPOUND,PROPERTY>
    - ambit2.rest.rdf.sparql.RDFCompoundIterator
  - ambit2.rest.legacy.RDFAbstractFeatureIterator<PROPERTY>
  - ambit2.rest.rdf.sparql.RDFAbstractFeatureIterator<PROPERTY>
    - ambit2.rest.rdf.sparql.RDFFeatureIterator
    - ambit2.rest.legacy.RDFFeaturesIterator
- ambit2.reactions.Reaction
- ambit2.reactions.mapping.ReactionAtomMapping
- ambit2.reactions.ReactionConst
- ambit2.reactions.sets.ReactionData
- ambit2.reactions.ReactionDataBase
- ambit2.reactions.sets.ReactionGroup
- ambit2.reactions.rules.conditions.ReactionGroupCondition (implements ambit2.rules.conditions.ICondition)
- ambit2.reactions.retrosynth.ReactionKnowledgeBase
- ambit2.reactions.rules.ReactionParser
- ambit2.reactions.io.ReactionReadUtils
- ambit2.reactions.io.ReactionReadUtils.ReactionDataObject
- ambit2.reactions.rules.scores.ReactionScore
- ambit2.reactions.rules.scores.ReactionScoreSchema
- ambit2.smarts.smirks.ReactionSearch
- ambit2.reactions.retrosynth.ReactionSequence
- ambit2.reactions.retrosynth.ReactionSequence.InchiEntry
- ambit2.reactions.retrosynth.ReactionSequenceLevel
- ambit2.reactions.rules.scores.ReactionSequenceScore
- ambit2.reactions.rules.scores.ReactionSequenceScoreSchema
- ambit2.reactions.retrosynth.ReactionSequenceStep
- ambit2.reactions.sets.ReactionSet
- ambit2.reactions.io.ReactionWriteUtils
- ambit2.reactions.reactor.Reactor
- ambit2.reactions.cli.ReactorCli
- ambit2.reactions.reactor.ReactorConsole
- ambit2.reactions.reactor.ReactorInfoPack
- ambit2.reactions.reactor.ReactorNode
- ambit2.reactions.reactor.ReactorResult
- ambit2.reactions.reactor.ReactorStrategy
- java.io.Reader (implements java.io.Closeable, java.lang.Readable)
  - java.io.FilterReader
    - ambit2.core.io.MultiNewlineFilterReader
- ambit2.db.substance.study.ReadSubstanceStudyFlat (implements net.idea.modbcum.i.IParameterizedQuery<F,T,C>, net.idea.modbcum.i.IQueryObject<ResultType>, net.idea.modbcum.i.IQueryRetrieval<ResultType>)
- ambit2.rules.functions.ReciprocalFunction (implements ambit2.rules.functions.IFunction)
- ambit2.core.filter.RecordIntervalCondition (implements ambit2.core.filter.IMoleculeFilterCondition)
- ambit2.rendering.RendererModelWrapper
- ambit2.core.config.Resources
- org.restlet.Restlet (implements org.restlet.Uniform)
  - org.restlet.Application
    - ambit2.rest.TaskApplication<USERID> (implements net.idea.restnet.i.task.ITaskApplication<USERID>)
      - ambit2.rest.freemarker.FreeMarkerApplication<USERID> (implements net.idea.restnet.i.freemarker.IFreeMarkerApplication<CONFIG>)
  - org.restlet.Component
    - ambit2.rest.RESTComponent
  - org.restlet.routing.Filter
    - ambit2.rest.OriginFilter
- ambit2.reactions.retrosynth.RetroSynthesis
- ambit2.reactions.retrosynth.RetroSynthesisResult
- ambit2.reactions.retrosynth.RetroSynthNode
- ambit2.reactions.retrosynth.RetroSynthPath
- ambit2.reactions.rules.RetroSynthRule (implements ambit2.reactions.rules.IRetroSynthRule)
- ambit2.reactions.rules.RetroSynthRuleInstance (implements ambit2.reactions.rules.IRetroSynthRuleInstance)
- ambit2.reactions.retrosynth.RetroSynthStep
- ambit2.smarts.RingClosure
- ambit2.reactions.rules.scores.RingComplexity
- ambit2.descriptors.utils.RingInfo
- ambit2.descriptors.constitutional.RotatableBondFractionDescriptor (implements org.openscience.cdk.qsar.IMolecularDescriptor)
- ambit2.tautomers.Rule
- ambit2.groupcontribution.nmr.nmr_1h.Rule2J
- ambit2.groupcontribution.nmr.nmr_1h.Rule3J
- ambit2.tautomers.RuleInstance (implements ambit2.tautomers.IRuleInstance)
- ambit2.tautomers.RuleManager
- ambit2.tautomers.RuleParser
- ambit2.tautomers.RuleSelector
- ambit2.tautomers.RuleStateBondDistribution
- ambit2.tautomers.RuleStateFlags
- ambit2.reactions.syntheticaccessibility.SADescriptors
- ambit2.export.isa.v1_0.objects.Sample
- ambit2.reactions.generator.score.ScoreFunction
- ambit2.reactions.generator.score.ScoreFunctionParser
- ambit2.smarts.Screening
- ambit2.smarts.ScreeningData
- ambit2.core.io.SDFBrokenLineTerminationConverter
- ambit2.pubchem.SearchApplication
- ambit2.smarts.SequenceElement
- org.restlet.service.Service
  - org.restlet.service.StatusService
    - ambit2.rest.freemarker.FreeMarkerStatusService (implements net.idea.restnet.i.freemarker.IFreeMarkerSupport)
- ambit2.db.SessionID
- ambit2.core.io.SGroupMDL2000Helper
- ambit2.reactions.SimilarityManager
- ambit2.reactions.SimilarityManager.TransformedStartMaterialData
- ambit2.descriptors.simmatrix.SimilarityMatrix<T>
  - ambit2.descriptors.simmatrix.SimilarityMatrixBitset
  - ambit2.descriptors.simmatrix.SimilarityMatrixDouble
- ambit2.base.io.SimpleErrorHandler (implements org.xml.sax.ErrorHandler)
- ambit2.core.io.SimpleIOListener (implements org.openscience.cdk.io.listener.IReaderListener, org.openscience.cdk.io.listener.IWriterListener)
- ambit2.rest.task.SingleTaskIterator<USERID> (implements java.util.Iterator<E>)
- ambit2.descriptors.SizeDescriptor (implements org.openscience.cdk.qsar.IMolecularDescriptor)
- ambit2.sln.io.SLN2ChemObject
- ambit2.sln.io.SLN2SMARTS
- ambit2.sln.io.SLN2Substance
- ambit2.sln.io.SLN2SubstanceConfig
- ambit2.sln.io.SLN2SubstanceConfig.ConversionFlags
- ambit2.sln.io.SLN2SubstanceConfig.JsonFlags
- ambit2.sln.SLNAtomExpression
- ambit2.sln.SLNBondExpression
- ambit2.sln.SLNCompositeObject
  - ambit2.sln.SLNSubstance
- ambit2.sln.SLNConst
- ambit2.sln.SLNContainerAttributes
- ambit2.sln.dictionary.SLNDictionary
- ambit2.sln.SLNExpressionToken
- ambit2.sln.SLNHelper
- ambit2.sln.io.SLNIOHelpers
- ambit2.sln.SLNLogicalExpression
- ambit2.sln.SLNParser
- ambit2.sln.SLNParserError
- ambit2.sln.reaction.SLNReaction
- ambit2.sln.SLNRingClosure
- ambit2.sln.search.SLNSearchManager
- ambit2.smarts.SmartsConst
- ambit2.groupcontribution.correctionfactors.SmartsCorrectionFactor (implements ambit2.groupcontribution.correctionfactors.ICorrectionFactor)
- ambit2.smarts.SmartsExpressionToken
- ambit2.smarts.SmartsFingerprinter
- ambit2.smarts.SmartsFlags
- ambit2.smarts.SmartsHelper
- ambit2.smarts.smirks.SmartsIsomorphismTester
- ambit2.smarts.SmartsLogicalExpression
- ambit2.smarts.SmartsManager
- ambit2.smarts.smirks.SmartsMatch
- ambit2.smarts.SmartsParser
- ambit2.smarts.SmartsParserError
- ambit2.smarts.query.SmartsPatternFactory (implements ambit2.smarts.query.ISmartsPatternFactory)
- ambit2.smarts.SmartsScreeningKeys
- ambit2.core.smiles.SmilesParserWrapper (implements java.beans.PropertyChangeListener)
- ambit2.smarts.SMIRKSManager
- ambit2.smarts.smirks.SmirksMatch
- ambit2.smarts.SMIRKSReaction
- ambit2.smarts.SMIRKSTransform
- ambit2.smarts.processors.SMIRKSTransformation (implements java.lang.Comparable<T>)
- ambit2.some.SOMEResultsParser
  - ambit2.some.SOMEVisualizer (implements ambit2.rendering.IAtomContainerHighlights, ambit2.core.data.IStructureDiagramHighlights)
- ambit2.export.isa.v1_0.objects.Source
- ambit2.descriptors.SpherosityDescriptor (implements org.openscience.cdk.qsar.IMolecularDescriptor)
  - ambit2.descriptors.CrossSectionalDiameterDescriptor
  - ambit2.descriptors.MaximumDiameterDescriptor
  - ambit2.descriptors.PlanarityDescriptor
- ambit2.reactions.retrosynth.StartingMaterialsDataBase
- ambit2.reactions.retrosynth.StartingMaterialsDataBase.StartMaterialData
- ambit2.reactions.retrosynth.StartingMaterialsDataBase.StartMaterialStandartization
- ambit2.groupcontribution.utils.math.Statistics
- ambit2.smarts.StereoChange
- ambit2.smarts.StereoChemUtils
- ambit2.smarts.StereoChiralAtTransformation
- ambit2.smarts.StereoDBTransformation
- ambit2.smarts.StereoFromSmartsAtomExpression
- ambit2.smarts.smirks.StereoTransformation
- ambit2.db.search.StoredQuery (implements ambit2.db.search.IStoredQuery)
- ambit2.core.io.StringArrayHeader<CATEGORIES>
- ambit2.base.data.StringBean
- ambit2.smarts.StructInfo
- ambit2.jchempaint.editor.StructureDiagramEditor (implements ambit2.base.interfaces.IAmbitEditor<T>)
- ambit2.structure2name.StructureFromIUPACName
- ambit2.reactions.generator.StructureGenerator
- ambit2.base.data.StructureRecord (implements ambit2.base.interfaces.IStructureRecord)
  - ambit2.base.data.SubstanceRecord
- ambit2.smarts.StructureSetAnalyzer
- ambit2.smarts.StructureSetAnalyzer.CharStructInfo
- ambit2.export.isa.v1_0.objects.Study
- ambit2.core.io.study.StudyFormatter
- ambit2.base.data.substance.SubstanceEndpointsBundle (implements ambit2.base.data.ISourceDataset)
- ambit2.groupcontribution.nmr.Substituent
- ambit2.groupcontribution.nmr.SubstituentInstance
- ambit2.tautomers.zwitterion.SulfGroup (implements ambit2.tautomers.zwitterion.IAcidicCenter)
- ambit2.tautomers.zwitterion.SulfinicGroup (implements ambit2.tautomers.zwitterion.IAcidicCenter)
- ambit2.tautomers.zwitterion.SulfonicGroup (implements ambit2.tautomers.zwitterion.IAcidicCenter)
- ambit2.reactions.cli.SyntheticAccessibilityCli
- ambit2.reactions.syntheticaccessibility.SyntheticAccessibilityManager
- ambit2.reactions.syntheticaccessibility.SyntheticAccessibilityManager.DescrData
- ambit2.reactions.syntheticaccessibility.SyntheticAccessibilityStrategy
- ambit2.reactions.retrosynth.SyntheticStrategy
- ambit2.export.isa.tab.TabFileUtils
- javax.swing.table.TableColumn (implements java.io.Serializable)
  - ambit2.ui.EditableHeaderTableColumn
- ambit2.rest.task.Task<REFERENCE,USERID> (implements net.idea.restnet.i.task.ITask<REFERENCE,USERID>, java.io.Serializable)
- ambit2.rest.task.TaskResult (implements net.idea.restnet.i.task.ITaskResult)
- ambit2.rest.task.TaskStorage<USERID> (implements net.idea.restnet.i.task.ITaskStorage<USERID>)
- ambit2.tautomers.Tautomer2DescriptorUtils
- ambit2.tautomers.tools.TautomerAnalysis
- ambit2.tautomers.TautomerConst
- ambit2.tautomers.TautomerDistribution
- ambit2.tautomers.TautomerIncrementStep
- ambit2.tautomers.TautomerManager
- ambit2.tautomers.TautomerRanking
- ambit2.tautomers.rules.TautomerRegion
- ambit2.tautomers.TautomerRelation
- ambit2.tautomers.TautomerRelationGraph
- ambit2.tautomers.ranking.TautomerStringCode
- ambit2.tautomers.TautomerUtils
- ambit2.tautomers.TautomerUtils.TautomerPair
- ambit2.export.isa.v1_0.objects.TechnologyType
- ambit2.ui.editors.TemplateEditor (implements ambit2.base.interfaces.IAmbitEditor<T>)
- org.openscience.cdk.renderer.elements.TextElement (implements org.openscience.cdk.renderer.elements.IRenderingElement)
  - ambit2.rendering.ImageMapAreaElement
- java.lang.Throwable (implements java.io.Serializable)
  - java.lang.Exception
    - net.idea.modbcum.i.exceptions.AmbitException
      - ambit2.base.exceptions.AmbitIOException
      - ambit2.base.exceptions.EmptyMoleculeException
      - ambit2.base.processors.ProcessorException
        
        ambit2.pubchem.FileNotFoundException
        
        ambit2.base.exceptions.HttpException
      - ambit2.base.exceptions.PropertyNotInTemplateException
      - ambit2.pubchem.ServerError
      - ambit2.base.external.ShellException
      - ambit2.smarts.query.SMARTSException
    - ambit2.core.groups.GroupException
      - ambit2.core.groups.GroupNotFoundException
      - ambit2.core.groups.UnsupportedGroupOperation
    - ambit2.markush.MarkushException
    - ambit2.base.exceptions.NoDocumentUUIDException
    - ambit2.base.exceptions.QSARModelException
    - java.lang.RuntimeException
      - org.restlet.resource.ResourceException
        
        ambit2.rest.exception.ImportSubstanceException
        
        ambit2.rest.exception.RResourceException
        
        ambit2.rest.exception.TaskException
- ambit2.domain.stats.Tools
- ambit2.smarts.TopLayer
- ambit2.descriptors.utils.TopologicalLayers
- ambit2.descriptors.utils.TopologicalUtilities
- ambit2.groupcontribution.transformations.TransformationComposition (implements ambit2.groupcontribution.transformations.IValueTransformation)
- ambit2.groupcontribution.transformations.TransformationExp (implements ambit2.groupcontribution.transformations.IValueTransformation)
- ambit2.groupcontribution.transformations.TransformationLin (implements ambit2.groupcontribution.transformations.IValueTransformation)
- ambit2.groupcontribution.transformations.TransformationLn (implements ambit2.groupcontribution.transformations.IValueTransformation)
- ambit2.groupcontribution.transformations.TransformationPow (implements ambit2.groupcontribution.transformations.IValueTransformation)
- ambit2.smarts.smirks.Transformations
- ambit2.groupcontribution.transformations.TransformationUtils
- ambit2.domain.stats.transforms.transformfilters.TransformFilter (implements java.io.Serializable)
  - ambit2.domain.stats.transforms.transformfilters.OrthogonalTransform
- org.restlet.resource.UniformResource
  - org.restlet.resource.ServerResource
    - ambit2.rest.ProtectedResource (implements net.idea.restnet.i.aa.IAuthToken<T>)
      - ambit2.rest.freemarker.FreeMarkerResource (implements net.idea.restnet.i.freemarker.IFreeMarkerSupport)
        
        ambit2.rest.AbstractResource<Q,T,P>
        
        ambit2.rest.SimpleTaskResource<USERID>
      - ambit2.rest.task.LauncherResource
- ambit2.ui.Utils
- ambit2.groupcontribution.utils.math.ValidationConfig
- ambit2.base.data.study.Value<VALUE> (implements ambit2.base.data.study.IValue<VALUE,QUALIFIER,UNITS>)
  - ambit2.base.data.study.ValueAnnotated<VALUE,IDRESULT> (implements java.io.Serializable)
- ambit2.rules.conditions.value.Value (implements ambit2.rules.conditions.value.IValue)
- ambit2.rules.conditions.ValueCondition (implements ambit2.rules.conditions.IValueCondition)
- ambit2.rules.conditions.value.ValueInterval (implements ambit2.rules.conditions.value.IValueInterval)
- ambit2.similarity.stats.ValuePair (implements java.lang.Comparable<T>)
- ambit2.rules.functions.ValueTransformation
- ambit2.groupcontribution.groups.ValueTransformedGroup (implements ambit2.groupcontribution.groups.IGroup, ambit2.groupcontribution.transformations.IHasValueTransformation)
  - ambit2.groupcontribution.groups.AtomGroup
  - ambit2.groupcontribution.groups.BondGroup
  - ambit2.groupcontribution.groups.DGroup
  - ambit2.groupcontribution.groups.GGroup
- ambit2.descriptors.VerboseDescriptorResult<T,Result> (implements org.openscience.cdk.qsar.result.IDescriptorResult)
- ambit2.rest.wrapper.WrappedService<C>
- ambit2.core.io.XLSFileFormat (implements org.openscience.cdk.io.formats.IChemFormatMatcher)
- ambit2.tautomers.zwitterion.ZwitterionManager

Interface Hierarchy

java.lang.AutoCloseable
- java.io.Closeable
  - org.openscience.cdk.io.IChemObjectIO
    - org.openscience.cdk.io.IChemObjectReader
      - org.openscience.cdk.io.iterator.IIteratingChemObjectReader<T> (also extends java.util.Iterator<E>)
        
        ambit2.core.io.IRawReader<T>
      - ambit2.core.io.IRawReader<T>
    - org.openscience.cdk.io.iterator.IIteratingChemObjectReader<T> (also extends org.openscience.cdk.io.IChemObjectReader, java.util.Iterator<E>)
      - ambit2.core.io.IRawReader<T>
    - ambit2.core.io.IRawReader<T>
  - org.openscience.cdk.io.IChemObjectReader
    - org.openscience.cdk.io.iterator.IIteratingChemObjectReader<T> (also extends java.util.Iterator<E>)
      - ambit2.core.io.IRawReader<T>
    - ambit2.core.io.IRawReader<T>
  - org.openscience.cdk.io.iterator.IIteratingChemObjectReader<T> (also extends org.openscience.cdk.io.IChemObjectReader, java.util.Iterator<E>)
    - ambit2.core.io.IRawReader<T>
  - ambit2.core.io.IRawReader<T>
- org.openscience.cdk.io.IChemObjectIO
  - org.openscience.cdk.io.IChemObjectReader
    - org.openscience.cdk.io.iterator.IIteratingChemObjectReader<T> (also extends java.util.Iterator<E>)
      - ambit2.core.io.IRawReader<T>
    - ambit2.core.io.IRawReader<T>
  - org.openscience.cdk.io.iterator.IIteratingChemObjectReader<T> (also extends org.openscience.cdk.io.IChemObjectReader, java.util.Iterator<E>)
    - ambit2.core.io.IRawReader<T>
  - ambit2.core.io.IRawReader<T>
- org.openscience.cdk.io.IChemObjectReader
  - org.openscience.cdk.io.iterator.IIteratingChemObjectReader<T> (also extends java.util.Iterator<E>)
    - ambit2.core.io.IRawReader<T>
  - ambit2.core.io.IRawReader<T>
- org.openscience.cdk.io.iterator.IIteratingChemObjectReader<T> (also extends org.openscience.cdk.io.IChemObjectReader, java.util.Iterator<E>)
  - ambit2.core.io.IRawReader<T>
- ambit2.core.io.IRawReader<T>
java.lang.Cloneable
- org.openscience.cdk.interfaces.IAtom
  - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
- org.openscience.cdk.interfaces.IAtomType
  - org.openscience.cdk.interfaces.IAtom
    - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
  - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
- org.openscience.cdk.interfaces.ICDKObject
  - org.openscience.cdk.interfaces.IAtom
    - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
  - org.openscience.cdk.interfaces.IAtomType
    - org.openscience.cdk.interfaces.IAtom
      - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
    - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
  - org.openscience.cdk.interfaces.IChemObject
    - org.openscience.cdk.interfaces.IAtom
      - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
    - org.openscience.cdk.interfaces.IAtomType
      - org.openscience.cdk.interfaces.IAtom
        
        ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
      - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
    - org.openscience.cdk.interfaces.IElement
      - org.openscience.cdk.interfaces.IAtom
        
        ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
      - org.openscience.cdk.interfaces.IAtomType
        
        org.openscience.cdk.interfaces.IAtom
        
        ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
        
        ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
      - org.openscience.cdk.interfaces.IIsotope
        
        org.openscience.cdk.interfaces.IAtom
        
        ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
        
        org.openscience.cdk.interfaces.IAtomType
        
        org.openscience.cdk.interfaces.IAtom
        
        ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
        
        ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
        
        ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
      - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
    - org.openscience.cdk.interfaces.IIsotope
      - org.openscience.cdk.interfaces.IAtom
        
        ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
      - org.openscience.cdk.interfaces.IAtomType
        
        org.openscience.cdk.interfaces.IAtom
        
        ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
        
        ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
      - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
    - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
  - org.openscience.cdk.interfaces.IElement
    - org.openscience.cdk.interfaces.IAtom
      - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
    - org.openscience.cdk.interfaces.IAtomType
      - org.openscience.cdk.interfaces.IAtom
        
        ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
      - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
    - org.openscience.cdk.interfaces.IIsotope
      - org.openscience.cdk.interfaces.IAtom
        
        ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
      - org.openscience.cdk.interfaces.IAtomType
        
        org.openscience.cdk.interfaces.IAtom
        
        ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
        
        ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
      - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
    - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
  - org.openscience.cdk.interfaces.IIsotope
    - org.openscience.cdk.interfaces.IAtom
      - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
    - org.openscience.cdk.interfaces.IAtomType
      - org.openscience.cdk.interfaces.IAtom
        
        ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
      - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
    - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
  - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
- org.openscience.cdk.interfaces.IChemObject
  - org.openscience.cdk.interfaces.IAtom
    - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
  - org.openscience.cdk.interfaces.IAtomType
    - org.openscience.cdk.interfaces.IAtom
      - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
    - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
  - org.openscience.cdk.interfaces.IElement
    - org.openscience.cdk.interfaces.IAtom
      - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
    - org.openscience.cdk.interfaces.IAtomType
      - org.openscience.cdk.interfaces.IAtom
        
        ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
      - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
    - org.openscience.cdk.interfaces.IIsotope
      - org.openscience.cdk.interfaces.IAtom
        
        ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
      - org.openscience.cdk.interfaces.IAtomType
        
        org.openscience.cdk.interfaces.IAtom
        
        ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
        
        ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
      - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
    - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
  - org.openscience.cdk.interfaces.IIsotope
    - org.openscience.cdk.interfaces.IAtom
      - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
    - org.openscience.cdk.interfaces.IAtomType
      - org.openscience.cdk.interfaces.IAtom
        
        ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
      - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
    - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
  - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
- org.openscience.cdk.interfaces.IElement
  - org.openscience.cdk.interfaces.IAtom
    - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
  - org.openscience.cdk.interfaces.IAtomType
    - org.openscience.cdk.interfaces.IAtom
      - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
    - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
  - org.openscience.cdk.interfaces.IIsotope
    - org.openscience.cdk.interfaces.IAtom
      - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
    - org.openscience.cdk.interfaces.IAtomType
      - org.openscience.cdk.interfaces.IAtom
        
        ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
      - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
    - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
  - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
- org.openscience.cdk.interfaces.IIsotope
  - org.openscience.cdk.interfaces.IAtom
    - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
  - org.openscience.cdk.interfaces.IAtomType
    - org.openscience.cdk.interfaces.IAtom
      - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>)
    - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
  - ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
- ambit2.core.groups.ISGroup (also extends java.lang.Comparable<T>, org.openscience.cdk.interfaces.IAtom)
java.lang.Comparable<T>
- ambit2.core.groups.ISGroup (also extends org.openscience.cdk.interfaces.IAtom)
- ambit2.similarity.ISimilarityResultType
ambit2.db.DBVersion
ambit2.domain.stats.transforms.densityestimation.DrawableDensity
java.util.EventListener
- javax.swing.Action
  - ambit2.ui.IMoleculeEditAction
- java.awt.event.ActionListener
  - javax.swing.Action
    - ambit2.ui.IMoleculeEditAction
  - ambit2.ui.IMoleculeEditAction
- ambit2.ui.IMoleculeEditAction
ambit2.domain.stats.transforms.densityestimation.HighestDensityRegions
ambit2.smarts.IAcceptable
ambit2.rules.actions.IAction<RESULT>
- ambit2.core.i.IAtomContainerAction
- ambit2.rules.actions.IStringAction
ambit2.base.interfaces.IAmbitEditor<T>
ambit2.featureselection.IAttributeSelection<T>
ambit2.rules.IBasicRule
- ambit2.rules.IActionRule
ambit2.base.interfaces.IBatchProcessor<Target,ItemInput,Result>
ambit2.ui.table.IBrowserMode
ambit2.base.interfaces.ICategory
ambit2.tautomers.zwitterion.ICenter
- ambit2.tautomers.zwitterion.IAcidicCenter
- ambit2.tautomers.zwitterion.IBasicCenter
ambit2.base.interfaces.ICiteable
ambit2.db.processors.ICommand
ambit2.core.io.ICompoundImageTools
ambit2.rules.conditions.ICondition
- ambit2.rules.conditions.IDescriptorValueCondition
- ambit2.rules.conditions.IValueCondition
  - ambit2.rules.conditions.IDescriptorValueCondition
- ambit2.rules.conditions.IValueIntervalCondition
ambit2.model.IDataset<ID,Features,ResultType>
ambit2.rules.conditions.IDescriptorSolver
ambit2.similarity.measure.IDistanceFunction<T>
ambit2.core.data.model.IEvaluation<Content>
ambit2.core.groups.IExpandable
ambit2.core.groups.IFiltered<T>
ambit2.base.data.IFilteredColumns
ambit2.ui.table.IFindNavigator<E>
ambit2.domain.stats.IFunc
ambit2.rules.functions.IFunction
ambit2.groupcontribution.groups.IGroup
ambit2.groupcontribution.rules.IGroupRule
ambit2.groupcontribution.groups.IGroupSet
ambit2.groupcontribution.transformations.IHasValueTransformation
- ambit2.groupcontribution.correctionfactors.ICorrectionFactor
ambit2.ui.table.IHeaderAction
ambit2.export.isa.base.IISADataMapper
ambit2.export.isa.IISAExport
ambit2.structure2name.components.IIUPACComponent
ambit2.groupcontribution.descriptors.ILocalDescriptor
ambit2.groupcontribution.rules.ILocalDescriptorRule
ambit2.reactions.rules.IMetaRule
ambit2.ml.io.IMLOutput<V>
ambit2.base.data.IModel
ambit2.model.IModelDefinition<ID,Features,ResultType>
ambit2.similarity.stats.IModelHistogram<U>
ambit2.model.IModelStatistics<ResultType>
ambit2.core.filter.IMoleculeFilterCondition
ambit2.similarity.knn.INearestNeighborsSearch<T>
ambit2.similarity.stats.INearestNeighborsSearch<T>
ambit2.rules.conditions.INeedsDescriptorSolver
ambit2.rest.legacy.IOTPageable<T>
- ambit2.rest.legacy.IOTDataset (also extends ambit2.rest.legacy.IOTObject)
ambit2.ui.table.IPageNavigator
ambit2.rules.miscellaneous.IProgress
ambit2.reactions.retrosynth.IReactionSequenceHandler
ambit2.ui.table.IRecordNavigator
ambit2.reactions.rules.IRetroSynthRule
ambit2.reactions.rules.IRetroSynthRuleInstance
ambit2.tautomers.IRuleInstance
ambit2.reactions.generator.score.IScoreComponent
ambit2.base.data.ISelectableRecords
ambit2.sln.dictionary.ISLNDictionaryObject
ambit2.smarts.query.ISmartsPattern<T>
ambit2.smarts.query.ISmartsPatternFactory
ambit2.base.data.ISortableColumns
ambit2.descriptors.fingerprints.ISparseFingerprint<T>
net.idea.modbcum.i.IStatement
- net.idea.modbcum.i.IQueryObject<ResultType> (also extends java.io.Serializable)
  - ambit2.db.search.IStoredQuery (also extends ambit2.base.data.ISourceDataset)
- ambit2.db.search.IStoredQuery (also extends net.idea.modbcum.i.IQueryObject<ResultType>, ambit2.base.data.ISourceDataset)
ambit2.reactions.rules.IStrategyRule
ambit2.core.data.IStructureDiagramDepiction<OUTPUT>
- ambit2.core.data.IStructureDiagramHighlights
- ambit2.rendering.IStructureDiagramSelection<P>
ambit2.core.io.study.IStudyPrinter
java.util.Iterator<E>
- org.openscience.cdk.io.iterator.IIteratingChemObjectReader<T> (also extends org.openscience.cdk.io.IChemObjectReader)
  - ambit2.core.io.IRawReader<T>
- ambit2.base.interfaces.IRandomAccessChemObjectReader
- ambit2.core.io.IRawReader<T>
- java.util.ListIterator<E>
  - ambit2.base.interfaces.IRandomAccessChemObjectReader
ambit2.rules.conditions.value.IValue
ambit2.rules.conditions.value.IValueInterval
ambit2.groupcontribution.transformations.IValueTransformation
net.idea.modbcum.i.JSONSerializable
- ambit2.base.data.study.IParams<VALUE> (also extends java.util.Map<K,V>)
- ambit2.base.data.study.IValue<VALUE,QUALIFIER,UNITS>
javax.swing.ListModel<E>
- ambit2.base.data.TypedListModel<P>
java.util.Map<K,V>
- ambit2.base.data.study.IParams<VALUE> (also extends net.idea.modbcum.i.JSONSerializable)
ambit2.pubchem.ResultListener<ResultType>
java.io.Serializable
- ambit2.base.processors.IAmbitResult
- ambit2.rendering.IAtomContainerHighlights
- ambit2.base.interfaces.IChemical
  - ambit2.base.interfaces.IStructureRecord
- ambit2.model.numeric.IDataCoverage<DATA>
- ambit2.db.update.fp.IFingerprint<Type,Content>
- ambit2.base.interfaces.IInputOutputState
  - ambit2.core.io.IInputState
  - ambit2.core.io.IOutputState
- ambit2.core.io.IInputState
- ambit2.base.data.ILiteratureEntry
- ambit2.core.data.IObject2Properties<D>
- ambit2.rest.legacy.IOTAlgorithm
- ambit2.rest.legacy.IOTCompound
- ambit2.rest.legacy.IOTDataset (also extends ambit2.rest.legacy.IOTObject, ambit2.rest.legacy.IOTPageable<T>)
- ambit2.rest.legacy.IOTFeature
- ambit2.rest.legacy.IOTModel
- ambit2.rest.legacy.IOTObject
  - ambit2.rest.legacy.IOTAlgorithm
  - ambit2.rest.legacy.IOTCompound
  - ambit2.rest.legacy.IOTDataset (also extends ambit2.rest.legacy.IOTPageable<T>)
  - ambit2.rest.legacy.IOTFeature
  - ambit2.rest.legacy.IOTModel
- ambit2.core.io.IOutputState
- net.idea.modbcum.i.processors.IProcessor<Target,Result>
  - ambit2.rendering.IAtomContainerHighlights
  - ambit2.core.data.IObject2Properties<D>
  - ambit2.core.processors.structure.key.IStructureKey<Target,Result>
- net.idea.modbcum.i.IQueryObject<ResultType> (also extends net.idea.modbcum.i.IStatement)
  - ambit2.db.search.IStoredQuery (also extends ambit2.base.data.ISourceDataset)
- ambit2.base.data.ISourceDataset
  - ambit2.db.search.IStoredQuery (also extends net.idea.modbcum.i.IQueryObject<ResultType>)
- ambit2.db.search.IStoredQuery (also extends net.idea.modbcum.i.IQueryObject<ResultType>, ambit2.base.data.ISourceDataset)
- ambit2.core.processors.structure.key.IStructureKey<Target,Result>
- ambit2.base.interfaces.IStructureRecord
- ambit2.base.interfaces.IStructureRelation<RELATION_TYPE,RELATION_METRIC,FIRSTSTRUC,SECONDSTRUC>

Enum Hierarchy

java.lang.Object
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
  - ambit2.base.config.AMBITConfig
  - ambit2.base.config.Preferences.VTAGS
  - ambit2.base.config.Preferences.VINDEX
  - ambit2.base.data.AbstractDataset._props
  - ambit2.base.data.AmbitUser.USER_TYPE
  - ambit2.base.data.Bookmark.ResourceType
  - ambit2.base.data.Bookmark._fields
  - ambit2.base.data.ChEMBLProperties.ChEMBL_Class
  - ambit2.base.data.ChEMBLProperties.ChEMBL_Property
  - ambit2.base.data.ConsensusLabel.CONSENSUS_LABELS
  - ambit2.base.data.ILiteratureEntry._type
  - ambit2.base.data.ISelectableRecords.SELECTION_MODE
  - ambit2.base.data.ISourceDataset.fields
  - ambit2.base.data.ISourceDataset.license
  - ambit2.base.data.Property.IO_QUESTION
  - ambit2.base.data.QLabel.QUALITY
  - ambit2.base.data.study.EffectRecord._fields
  - ambit2.base.data.study.Protocol._categories
  - ambit2.base.data.study.Protocol._fields
  - ambit2.base.data.study.ProtocolApplication._fields
  - ambit2.base.data.study.ReliabilityParams._r_flags
  - ambit2.base.data.study.ValueAnnotated._fields
  - ambit2.base.data.study._FIELDS_RANGE
  - ambit2.base.data.study._FIELDS_RELIABILITY
  - ambit2.base.data.substance.ParticleTypes
  - ambit2.base.data.SubstanceRecord.jsonSubstance
  - ambit2.base.interfaces.ICategory.CategoryType
  - ambit2.base.interfaces.IStructureRecord.MOL_TYPE
  - ambit2.base.interfaces.IStructureRecord.STRUC_TYPE
  - ambit2.base.processors.search.AbstractFinder.MODE
  - ambit2.base.processors.search.AbstractFinder.SITE
  - ambit2.base.relation.composition.CompositionRelation.jsonFeature
  - ambit2.base.relation.STRUCTURE_RELATION
  - ambit2.base.ro.AbstractAnnotator._dictionaries
  - ambit2.core.data.model.Algorithm.requires
  - ambit2.core.data.model.Algorithm.AlgorithmFormat
  - ambit2.core.data.model.AlgorithmType
  - ambit2.core.data.model.IEvaluation.EVType
  - ambit2.core.data.model.IEvaluation.EVStatsType
  - ambit2.core.data.model.Parameter.ParameterScope
  - ambit2.core.filter.IntPropertyIntervalCondition.PropertyType
  - ambit2.core.groups.ContainerGroup.SGROUP_MIXTURE
  - ambit2.core.groups.DataGroup.DGROUP_DISPLAY
  - ambit2.core.groups.DataGroup.SGROUP_FIELD
  - ambit2.core.io.ECHAPreregistrationListReader.echa_tags
  - ambit2.core.io.FileState._FILE_TYPE
  - ambit2.core.io.I5ReaderSimple.i5_tags
  - ambit2.core.io.I5ReaderSimple.i5_refs_attr
  - ambit2.core.io.RawIteratingFolderReader.FileNameMode
  - ambit2.core.io.SGroupMDL2000Helper.SGROUP_LINE
  - ambit2.core.io.SGroupMDL2000Helper.SGROUP_TYPE
  - ambit2.core.io.SGroupMDL2000Helper.SGROUP_POLYMER_TYPE
  - ambit2.core.io.SGroupMDL2000Helper.SGROUP_CONNECTIVITY
  - ambit2.core.io.ToXMLReaderSimple.toxml_names
  - ambit2.core.io.ToXMLReaderSimple.toxml_attributes
  - ambit2.core.io.ToXMLReaderSimple.toxml_tags_level1
  - ambit2.core.io.ToXMLReaderSimple.toxml_tags
  - ambit2.core.io.ToXMLReaderSimple.toxml_quantity_types
  - ambit2.core.processors.structure.key.ExactStructureSearchMode
  - ambit2.core.processors.structure.key.IStructureKey.Matcher
  - ambit2.core.smiles.SmilesParserWrapper.SMILES_PARSER
  - ambit2.db.DbReader.cached_results
  - ambit2.db.processors.AbstractPropertyWriter.mode
  - ambit2.db.processors.AbstractRepositoryWriter.OP
  - ambit2.db.processors.FP1024Writer.FP1024_status
  - ambit2.db.processors.ICommand.COMMAND
  - ambit2.db.processors.ProcessorOntology.SIDE
  - ambit2.db.processors.ProcessorOntology.OP
  - ambit2.db.readers.AbstractStructureRetrieval._sqlids
  - ambit2.db.readers.RetrieveProfileValues.SearchMode
  - ambit2.db.reporters.SmilesReporter.Mode
  - ambit2.db.search.property.AbstractPropertyRetrieval.PROPERTY_TABLE
  - ambit2.db.search.property.AbstractPropertyRetrieval.REFERENCE_TABLE
  - ambit2.db.search.property.AbstractPropertyRetrieval.ANNOTATIONS_TABLE
  - ambit2.db.search.property.AbstractPropertyRetrieval.SearchMode
  - ambit2.db.search.property.AbstractPropertyRetrieval._PROPERTY_TYPE
  - ambit2.db.search.property.ModelTemplates._ModelTemplates
  - ambit2.db.search.property.PropertiesByDataset.QField
  - ambit2.db.search.property.PropertiesByQuery.QField
  - ambit2.db.search.property.PropertyCount.PropertyCriteria
  - ambit2.db.search.property.RetrieveProfile.QueryMode
  - ambit2.db.search.QueryCombined.COMBINE
  - ambit2.db.search.SQLFileQueryParams._fields
  - ambit2.db.search.structure.AbstractStructureQuery.FIELD_NAMES
  - ambit2.db.search.structure.pairwise.ChemicalSpaceQuery.ChemSpaceMethod
  - ambit2.db.search.structure.pairwise.RetrieveStructurePair.rs_index
  - ambit2.db.search.structure.QueryAtomEnvironment.q_modifier
  - ambit2.db.search.structure.SCOPE
  - ambit2.db.substance.AbstractReadSubstance._sqlids
  - ambit2.db.substance.QueryCountProtocolApplications._mode_related
  - ambit2.db.substance.ReadSubstanceByName._namecondition
  - ambit2.db.substance.ReadSubstanceByOwner._ownersearchmode
  - ambit2.db.substance.ReadSubstanceByStudy._studysearchmode
  - ambit2.db.substance.study.SubstanceStudyFlatQuery._QUERY_TYPE
  - ambit2.db.update.bundle.matrix.ReadEffectRecordByBundleMatrix._matrix
  - ambit2.db.update.bundle.UpdateBundle._published_status
  - ambit2.db.update.dataset.AbstractReadDataset._fields
  - ambit2.db.update.dataset.QueryDatasetByFeatures.c_feature
  - ambit2.db.update.fp.QueryFingerprints._order
  - ambit2.db.update.model.AbstractModelQuery._models_criteria
  - ambit2.db.update.propertyannotations.ReadPropertyAnnotations._fields
  - ambit2.db.update.storedquery.ReadStoredQuery._query
  - ambit2.db.results.StoredQueryTableModel.FIELDS
  - ambit2.descriptors.AbstractKekulizationVerifier.names_index
  - ambit2.descriptors.AtomEnvironmentDescriptor._param
  - ambit2.descriptors.processors.DescriptorValue2Property.answer
  - ambit2.descriptors.utils.GraphMatrices.DMAtomState
  - ambit2.dragon.DragonShell._options
  - ambit2.export.isa.base.ExternalDataFileManager.StorageMode
  - ambit2.export.isa.base.ISAConst.DataFileFormat
  - ambit2.export.isa.base.ISAConst.ISAVersion
  - ambit2.export.isa.base.ISAConst.ISAFormat
  - ambit2.export.isa.base.ISALocation.Layer
  - ambit2.export.isa.v1_0.objects.Data.Type
  - ambit2.export.isa.v1_0.objects.Material.Type
  - ambit2.groupcontribution.correctionfactors.ICorrectionFactor.Type
  - ambit2.groupcontribution.dataset.LocalProperties.Type
  - ambit2.groupcontribution.descriptors.ILocalDescriptor.Type
  - ambit2.groupcontribution.GroupContributionModel.Type
  - ambit2.groupcontribution.groups.IGroup.Type
  - ambit2.groupcontribution.nmr.nmr_1h.HAtomEnvironment.ShiftAssociation
  - ambit2.groupcontribution.rules.ILocalDescriptorRule.RuleType
  - ambit2.groupcontribution.utils.math.CrossValidation.ObjectSelection
  - ambit2.model.IModelStatistics.ModelStatus
  - ambit2.model.numeric.ADomainMethodType
  - ambit2.model.numeric.DatasetCenterPoint
  - ambit2.model.structure.AtomEnvironmentDistanceType
  - ambit2.pubchem.NCISearchProcessor.METHODS
  - ambit2.pubchem.rest.PUGRestImageRequest.RECORD_TYPE
  - ambit2.pubchem.rest.PUGRestImageRequest.IMAGE_SIZE
  - ambit2.pubchem.rest.PUGRestRequest.COMPOUND_DOMAIN_INPUT
  - ambit2.pubchem.rest.PUGRestRequest.COMPOUND_DOMAIN_OPERATION
  - ambit2.pubchem.rest.PUGRestRequest.COMPOUND_DOMAIN_OUTPUT
  - ambit2.reactions.GenericReaction.ReactionType
  - ambit2.reactions.GenericReaction.TransformType
  - ambit2.reactions.GenericReaction.ReactionConfigStatus
  - ambit2.reactions.reactor.ReactorNode.State
  - ambit2.reactions.retrosynth.IReactionSequenceHandler.EventType
  - ambit2.reactions.retrosynth.ReactionSequence.MoleculeStatus
  - ambit2.reactions.retrosynth.ReactionSequence.SortingMethod
  - ambit2.reactions.retrosynth.StartingMaterialsDataBase.AccessType
  - ambit2.reactions.retrosynth.SyntheticStrategy.ReactionCenterComplexityMethod
  - ambit2.reactions.rules.conditions.ReactionGroupCondition.RGConditionType
  - ambit2.reactions.rules.IRetroSynthRule.Type
  - ambit2.reactions.rules.IStrategyRule.Type
  - ambit2.reactions.SimilarityManager.SimilarityTransformation
  - ambit2.rendering.CompoundImageTools.Mode2D
  - ambit2.rendering.StructureEditorProcessor._commands
  - ambit2.rest.aa.opensso.OpenSSOServicesConfig.CONFIG
  - ambit2.rest.DisplayMode
  - ambit2.rest.freemarker.FreeMarkerStatusService.REPORT_LEVEL
  - ambit2.rest.legacy.IOTDataset.dataset_size
  - ambit2.rest.legacy.OTCompound._titles
  - ambit2.rest.legacy.OTDataset.dataset_size
  - ambit2.rest.OpenTox.URI
  - ambit2.rest.OpenTox.params
  - ambit2.rest.rdf.Annotea.Bookmark
  - ambit2.rest.rdf.Annotea.BookmarkProperty
  - ambit2.rest.rdf.Annotea.AnnoteaProperty
  - ambit2.rest.rdf.BibTex.BTClass
  - ambit2.rest.rdf.OTA.OTAClass
  - ambit2.rest.rdf.OTA.OTAProperty
  - ambit2.rest.rdf.OTEE.OTEEClass
  - ambit2.rest.rdf.OTEE.OTAProperty
  - ambit2.rest.substance.RDFTermsSubstance
  - ambit2.rest.task.Task.TaskProperty
  - ambit2.sln.dictionary.ISLNDictionaryObject.Type
  - ambit2.sln.io.LinearNotationType
  - ambit2.sln.SLNContainer.SLNObjectType
  - ambit2.smarts.DoubleBondStereoInfo.DBStereo
  - ambit2.smarts.query.SmartsPatternFactory.SmartsParser
  - ambit2.smarts.SmartsConst.SSM_MODE
  - ambit2.smarts.SmartsConst.HandleHAtoms
  - ambit2.smarts.smirks.SmartsMatch.MatchMode
  - ambit2.smarts.smirks.SmartsMatch.AttributeComparison
  - ambit2.smarts.smirks.SmirksTransformationFlag
  - ambit2.smarts.StereoChange.StereoElementType
  - ambit2.some.SOMERawReader.someindex
  - ambit2.structure2name.components.ComponentConnection.ConType
  - ambit2.structure2name.components.ComponentUtils.Comparison
  - ambit2.structure2name.components.IIUPACComponent.CompState
  - ambit2.structure2name.components.IIUPACComponent.CompType
  - ambit2.tautomers.TautomerConst.GAT
  - ambit2.tautomers.TautomerConst.RSM
  - ambit2.tautomers.TautomerConst.CanonicTautomerMethod
  - ambit2.tautomers.TautomerRelationGraph.StructureFormat
  - ambit2.tautomers.tools.TautomerAnalysis.Task
  - ambit2.tautomers.zwitterion.IAcidicCenter.State
  - ambit2.tautomers.zwitterion.IBasicCenter.State
  - ambit2.ui.editors.SelectFieldsPanel.MOVE
  - ambit2.ui.Panel2D.property_name
  - ambit2.ui.Panel2D._atomrendermode
  - ambit2.ui.table.IBrowserMode.BrowserMode
  - ambit2.ui.WizardPanel.ANSWER_MODE
  - ambit2.rules.conditions.DescriptorExpression.LogicalOperation
  - ambit2.rules.conditions.ICondition.CondType
  - ambit2.rules.conditions.value.IValue.Relation
  - ambit2.rules.functions.ValueTransformation.Type
  - ambit2.rules.json.JSONParsingUtils.STRUCTURE_RECORD_INPUT_INFO
  - ambit2.descriptors.AtomEnvironentMatrix._param
  - ambit2.descriptors.processors.FPTable
  - ambit2.ml.io.app.AmbitML.out_formats

Hierarchy For All Packages

Class Hierarchy

Interface Hierarchy

Enum Hierarchy