Uses of Package
ambit2.base.data.study

Packages that use ambit2.base.data.study

Package	Description
ambit2.base.data	Base data structures; no chemistry.
ambit2.base.data.study	Detailed description of experimental data, linked to substances
ambit2.base.data.substance	Chemical substances, with complex composition (including nanomaterials)
ambit2.base.exceptions
ambit2.core.io	Input output support.
ambit2.core.io.json
ambit2.core.io.study
ambit2.db.reporters.xlsx
ambit2.db.substance
ambit2.db.substance.processor
ambit2.db.substance.study
ambit2.db.substance.study.facet
ambit2.db.update.bundle.matrix
ambit2.rest
ambit2.rest.substance

Classes in ambit2.base.data.study used by ambit2.base.data

Class and Description
ProtocolApplication

Classes in ambit2.base.data.study used by ambit2.base.data.study

Class and Description
_FIELDS_RANGE
_FIELDS_RELIABILITY
EffectRecord Effect record.
EffectRecord._fields
IParams
IValue
Params
Protocol "protocol": { "topcategory": "TOX", "category": { "code": "TO_ACUTE_INHAL_SECTION", "title": "7.2.2Acutetoxicity-inhalation" }, "endpoint": "Acute toxicity: inhalation,IUC4#10/Ch.5.1.2", "guideline": [ "Method: other: sensoryirritationaccordingtoAlarie,Y.;(nofurtherdata)" ] }
Protocol._categories TODO refactor this to make ontology use easier
Protocol._fields
ProtocolApplication
ProtocolApplication._fields
ProtocolEffectRecord Extension of EffectRecord to be able to attach the protocol
ReliabilityParams Corresponds to Klimish codes
ReliabilityParams._r_flags
Value TODO extend with a field to store the location of where the value came from make it an interface here IDataLocation and implementation in the export package
ValueAnnotated
ValueAnnotated._fields

Classes in ambit2.base.data.study used by ambit2.base.data.substance

Class and Description
IParams
ReliabilityParams._r_flags

Classes in ambit2.base.data.study used by ambit2.base.exceptions

Class and Description
ProtocolApplication

Classes in ambit2.base.data.study used by ambit2.core.io

Class and Description
IParams
Protocol "protocol": { "topcategory": "TOX", "category": { "code": "TO_ACUTE_INHAL_SECTION", "title": "7.2.2Acutetoxicity-inhalation" }, "endpoint": "Acute toxicity: inhalation,IUC4#10/Ch.5.1.2", "guideline": [ "Method: other: sensoryirritationaccordingtoAlarie,Y.;(nofurtherdata)" ] }
ProtocolApplication
ReliabilityParams Corresponds to Klimish codes

Classes in ambit2.base.data.study used by ambit2.core.io.json

Class and Description
EffectRecord Effect record.
IParams
Protocol "protocol": { "topcategory": "TOX", "category": { "code": "TO_ACUTE_INHAL_SECTION", "title": "7.2.2Acutetoxicity-inhalation" }, "endpoint": "Acute toxicity: inhalation,IUC4#10/Ch.5.1.2", "guideline": [ "Method: other: sensoryirritationaccordingtoAlarie,Y.;(nofurtherdata)" ] }
ProtocolApplication
ValueAnnotated

Classes in ambit2.base.data.study used by ambit2.core.io.study

Class and Description
EffectRecord Effect record.
IParams
IValue
MultiValue
Protocol "protocol": { "topcategory": "TOX", "category": { "code": "TO_ACUTE_INHAL_SECTION", "title": "7.2.2Acutetoxicity-inhalation" }, "endpoint": "Acute toxicity: inhalation,IUC4#10/Ch.5.1.2", "guideline": [ "Method: other: sensoryirritationaccordingtoAlarie,Y.;(nofurtherdata)" ] }
Protocol._categories TODO refactor this to make ontology use easier
ProtocolApplication
ProtocolEffectRecord Extension of EffectRecord to be able to attach the protocol
ProtocolEffectRecordMatrix
ReliabilityParams._r_flags
Value TODO extend with a field to store the location of where the value came from make it an interface here IDataLocation and implementation in the export package

Classes in ambit2.base.data.study used by ambit2.db.reporters.xlsx

Class and Description
ReliabilityParams._r_flags

Classes in ambit2.base.data.study used by ambit2.db.substance

Class and Description
EffectRecord Effect record.

Classes in ambit2.base.data.study used by ambit2.db.substance.processor

Class and Description
EffectRecord Effect record.
ProtocolApplication

Classes in ambit2.base.data.study used by ambit2.db.substance.study

Class and Description
EffectRecord Effect record.
IParams
Params
Protocol "protocol": { "topcategory": "TOX", "category": { "code": "TO_ACUTE_INHAL_SECTION", "title": "7.2.2Acutetoxicity-inhalation" }, "endpoint": "Acute toxicity: inhalation,IUC4#10/Ch.5.1.2", "guideline": [ "Method: other: sensoryirritationaccordingtoAlarie,Y.;(nofurtherdata)" ] }
ProtocolApplication
ProtocolEffectRecord Extension of EffectRecord to be able to attach the protocol

Classes in ambit2.base.data.study used by ambit2.db.substance.study.facet

Class and Description
EffectRecord Effect record.
IParams
Protocol "protocol": { "topcategory": "TOX", "category": { "code": "TO_ACUTE_INHAL_SECTION", "title": "7.2.2Acutetoxicity-inhalation" }, "endpoint": "Acute toxicity: inhalation,IUC4#10/Ch.5.1.2", "guideline": [ "Method: other: sensoryirritationaccordingtoAlarie,Y.;(nofurtherdata)" ] }
Protocol._categories TODO refactor this to make ontology use easier
ProtocolApplication

Classes in ambit2.base.data.study used by ambit2.db.update.bundle.matrix

Class and Description
ProtocolEffectRecord Extension of EffectRecord to be able to attach the protocol
ValueAnnotated

Classes in ambit2.base.data.study used by ambit2.rest

Class and Description
ModelParams

Classes in ambit2.base.data.study used by ambit2.rest.substance

Class and Description
EffectRecord Effect record.
IParams
ProtocolApplication