Uses of Interface
ambit2.base.data.study.IParams

Packages that use IParams

Package	Description
ambit2.base.data.study	Detailed description of experimental data, linked to substances
ambit2.base.data.substance	Chemical substances, with complex composition (including nanomaterials)
ambit2.core.io	Input output support.
ambit2.core.io.json
ambit2.core.io.study
ambit2.db.substance.study
ambit2.db.substance.study.facet
ambit2.rest.substance

Uses of IParams in ambit2.base.data.study

Classes in ambit2.base.data.study that implement IParams

Modifier and Type	Class and Description
class	ModelParams
class	Params<VALUE>
class	ReliabilityParams<VALUE> Corresponds to Klimish codes

Method parameters in ambit2.base.data.study with type arguments of type IParams

Modifier and Type	Method and Description
IStructureRecord	StructureRecordValidator.validate(SubstanceRecord record, ProtocolApplication<Protocol,IParams,String,IParams,String> papp)
IStructureRecord	StructureRecordValidator.validate(SubstanceRecord record, ProtocolApplication<Protocol,IParams,String,IParams,String> papp)

Uses of IParams in ambit2.base.data.substance

Methods in ambit2.base.data.substance with parameters of type IParams

Modifier and Type	Method and Description
String	SubstanceProperty.createHashedIdentifier(IParams conditions)

Uses of IParams in ambit2.core.io

Methods in ambit2.core.io that return types with arguments of type IParams

Modifier and Type	Method and Description
protected ProtocolApplication<Protocol,IParams,String,IParams,String>	StringArrayHeader.getExperiment(CATEGORIES categories, SubstanceRecord record, Protocol protocol, ReliabilityParams reliability)
protected ProtocolApplication<Protocol,IParams,String,IParams,String>	StringArrayHeader.getExperiment(CATEGORIES categories, SubstanceRecord record, Protocol protocol, ReliabilityParams reliability)

Method parameters in ambit2.core.io with type arguments of type IParams

Modifier and Type	Method and Description
protected void	StringArrayHeader.setCitation(ProtocolApplication<Protocol,IParams,String,IParams,String> experiment)
protected void	StringArrayHeader.setCitation(ProtocolApplication<Protocol,IParams,String,IParams,String> experiment)

Uses of IParams in ambit2.core.io.json

Methods in ambit2.core.io.json that return IParams

Modifier and Type	Method and Description
static IParams	SubstanceStudyParser.parseConditions(com.fasterxml.jackson.databind.ObjectMapper dx, Object json)
static IParams	SubstanceStudyParser.parseParams(com.fasterxml.jackson.databind.node.ObjectNode node)
static IParams	SubstanceStudyParser.parseTextValueProteomics(com.fasterxml.jackson.databind.ObjectMapper dx, String t)

Uses of IParams in ambit2.core.io.study

Methods in ambit2.core.io.study with parameters of type IParams

Modifier and Type	Method and Description
protected void	StudyFormatter.printConditions(int row, IParams params, com.fasterxml.jackson.databind.node.ObjectNode config, IStudyPrinter printer, ReliabilityParams._r_flags flag)

Method parameters in ambit2.core.io.study with type arguments of type IParams

Modifier and Type	Method and Description
PropertyAnnotations	ProtocolEffectRecord2SubstanceProperty.conditions2annotations(ProtocolEffectRecord<String,IParams,String> detail)
static void	ProtocolEffectRecord2SubstanceProperty.copyEffectRecordValues(ProtocolEffectRecord detail, ProtocolEffectRecord<String,IParams,String> effect)
ILiteratureEntry	ProtocolEffectRecord2SubstanceProperty.getReference(ProtocolEffectRecord<String,IParams,String> detail)
SubstanceProperty	ProtocolEffectRecord2SubstanceProperty.process(ProtocolEffectRecord<String,IParams,String> detail)

Uses of IParams in ambit2.db.substance.study

Classes in ambit2.db.substance.study with type parameters of type IParams

Modifier and Type	Class and Description
class	ReadSubstanceStudy<PA extends ProtocolApplication<Protocol,String,String,IParams,String>>

Constructor parameters in ambit2.db.substance.study with type arguments of type IParams

Constructor and Description
UpdateSubstanceStudy(String substanceuuid, ProtocolApplication<Protocol,IParams,String,IParams,String> papp)
UpdateSubstanceStudy(String substanceuuid, ProtocolApplication<Protocol,IParams,String,IParams,String> papp)
UpdateSubstanceStudyBundle(SubstanceEndpointsBundle bundle, String substanceuuid, ProtocolApplication<Protocol,IParams,String,IParams,String> papp)
UpdateSubstanceStudyBundle(SubstanceEndpointsBundle bundle, String substanceuuid, ProtocolApplication<Protocol,IParams,String,IParams,String> papp)

Uses of IParams in ambit2.db.substance.study.facet

Method parameters in ambit2.db.substance.study.facet with type arguments of type IParams

Modifier and Type	Method and Description
String[]	FacetAnnotator.annotate(EffectRecord<String,IParams,String> effect)
protected void	FacetAnnotator.annotate(ProtocolApplication<Protocol,IParams,String,IParams,String> papp)
protected void	FacetAnnotator.annotate(ProtocolApplication<Protocol,IParams,String,IParams,String> papp)

Uses of IParams in ambit2.rest.substance

Method parameters in ambit2.rest.substance with type arguments of type IParams

Modifier and Type	Method and Description
protected String	SubstanceRecordStaxWriter.writeEndpoint(String substanceURI, String measurementGroupURI, EffectRecord<String,IParams,String> effect) 33.4889 Potency