ambit2.chebi

Class ChEBIClient

java.lang.Object

ambit2.chebi.ChEBIClient

All Implemented Interfaces:

Iterator<IStructureRecord>

public class ChEBIClient
extends Object
implements Iterator<IStructureRecord>

http://www.ebi.ac.uk/chebi/webServices.do

Author:

nina

Field Summary

Fields

Modifier and Type	Field and Description
protected uk.ac.ebi.chebi.webapps.chebiWS.client.ChebiWebServiceClient	client
protected uk.ac.ebi.chebi.webapps.chebiWS.model.LiteEntityList	entities
protected static Logger	logger
protected int	record
protected List<uk.ac.ebi.chebi.webapps.chebiWS.model.LiteEntity>	resultList
protected IStructureRecord	structure

Constructor Summary

Constructors

Constructor and Description
ChEBIClient(String search, uk.ac.ebi.chebi.webapps.chebiWS.model.SearchCategory searchCategory)

Method Summary

Modifier and Type	Method and Description
IStructureRecord	entry2structurerecord(uk.ac.ebi.chebi.webapps.chebiWS.model.LiteEntity chebiEntity, IStructureRecord struc)
static Property	getChebiProperty(String name, String alias)
static void	getStructureSearchExample()
boolean	hasNext()
IStructureRecord	next()
void	remove()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Iterator

forEachRemaining

Field Detail

logger

protected static Logger logger

structure

protected IStructureRecord structure

client

protected uk.ac.ebi.chebi.webapps.chebiWS.client.ChebiWebServiceClient client

entities

protected uk.ac.ebi.chebi.webapps.chebiWS.model.LiteEntityList entities

resultList

protected List<uk.ac.ebi.chebi.webapps.chebiWS.model.LiteEntity> resultList

record

protected int record

Constructor Detail

ChEBIClient

public ChEBIClient(String search,
                   uk.ac.ebi.chebi.webapps.chebiWS.model.SearchCategory searchCategory)
            throws uk.ac.ebi.chebi.webapps.chebiWS.model.ChebiWebServiceFault_Exception

Throws:

uk.ac.ebi.chebi.webapps.chebiWS.model.ChebiWebServiceFault_Exception

Method Detail

getChebiProperty

public static Property getChebiProperty(String name,
                                        String alias)

getStructureSearchExample

public static void getStructureSearchExample()

hasNext

public boolean hasNext()

Specified by:

hasNext in interface Iterator<IStructureRecord>

next

public IStructureRecord next()

Specified by:

next in interface Iterator<IStructureRecord>

remove

public void remove()

Specified by:

remove in interface Iterator<IStructureRecord>

entry2structurerecord

public IStructureRecord entry2structurerecord(uk.ac.ebi.chebi.webapps.chebiWS.model.LiteEntity chebiEntity,
                                              IStructureRecord struc)
                                       throws uk.ac.ebi.chebi.webapps.chebiWS.model.ChebiWebServiceFault_Exception

Throws:

uk.ac.ebi.chebi.webapps.chebiWS.model.ChebiWebServiceFault_Exception