ambit2.core.io

Class InteractiveIteratingMDLReader

java.lang.Object

org.openscience.cdk.io.ChemObjectIO

org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader<org.openscience.cdk.interfaces.IAtomContainer>

org.openscience.cdk.io.iterator.IteratingSDFReader

ambit2.core.io.InteractiveIteratingMDLReader

All Implemented Interfaces:

Closeable, AutoCloseable, Iterator<org.openscience.cdk.interfaces.IAtomContainer>, org.openscience.cdk.io.IChemObjectIO, org.openscience.cdk.io.IChemObjectReader, org.openscience.cdk.io.iterator.IIteratingChemObjectReader<org.openscience.cdk.interfaces.IAtomContainer>

public class InteractiveIteratingMDLReader
extends org.openscience.cdk.io.iterator.IteratingSDFReader

A descendant of IteratingMDLReader able to ask for type of each SDF property

Author:

Nina Jeliazkova nina@acad.bg Modified 2006-2-18

Nested Class Summary

Nested classes/interfaces inherited from interface org.openscience.cdk.io.IChemObjectReader

org.openscience.cdk.io.IChemObjectReader.Mode

Field Summary

Fields inherited from class org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader

errorHandler, mode

Constructor Summary

Constructors

Constructor and Description
InteractiveIteratingMDLReader(InputStream in, org.openscience.cdk.interfaces.IChemObjectBuilder builder)
InteractiveIteratingMDLReader(InputStream in, org.openscience.cdk.interfaces.IChemObjectBuilder builder, boolean skip)
InteractiveIteratingMDLReader(Reader in, org.openscience.cdk.interfaces.IChemObjectBuilder builder)
InteractiveIteratingMDLReader(Reader in, org.openscience.cdk.interfaces.IChemObjectBuilder builder, boolean skip)

Method Summary

Modifier and Type	Method and Description
org.openscience.cdk.interfaces.IAtomContainer	next()
String	toString()

Methods inherited from class org.openscience.cdk.io.iterator.IteratingSDFReader

close, customizeJob, getFormat, hasNext, remove, setReader, setReader, setSkip

Methods inherited from class org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader

accepts, handleError, handleError, handleError, handleError, setErrorHandler, setReaderMode

Methods inherited from class org.openscience.cdk.io.ChemObjectIO

addChemObjectIOListener, addSetting, addSettings, fireIOSettingQuestion, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.openscience.cdk.io.IChemObjectIO

addChemObjectIOListener, addSetting, addSettings, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener

Methods inherited from interface java.util.Iterator

forEachRemaining

Constructor Detail

InteractiveIteratingMDLReader

public InteractiveIteratingMDLReader(Reader in,
                                     org.openscience.cdk.interfaces.IChemObjectBuilder builder)

Parameters:

in -

InteractiveIteratingMDLReader

public InteractiveIteratingMDLReader(Reader in,
                                     org.openscience.cdk.interfaces.IChemObjectBuilder builder,
                                     boolean skip)

InteractiveIteratingMDLReader

public InteractiveIteratingMDLReader(InputStream in,
                                     org.openscience.cdk.interfaces.IChemObjectBuilder builder)

Parameters:

in -

InteractiveIteratingMDLReader

public InteractiveIteratingMDLReader(InputStream in,
                                     org.openscience.cdk.interfaces.IChemObjectBuilder builder,
                                     boolean skip)

Method Detail

next

public org.openscience.cdk.interfaces.IAtomContainer next()

Specified by:

next in interface Iterator<org.openscience.cdk.interfaces.IAtomContainer>

Overrides:

next in class org.openscience.cdk.io.iterator.IteratingSDFReader

toString

public String toString()

Overrides:

toString in class Object