ambit2.core.io

Class IteratingChemObjectReaderWrapper

java.lang.Object

org.openscience.cdk.io.ChemObjectIO

org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader

ambit2.core.io.IteratingChemObjectReaderWrapper

All Implemented Interfaces:

Closeable, AutoCloseable, Iterator, org.openscience.cdk.io.IChemObjectIO, org.openscience.cdk.io.IChemObjectReader, org.openscience.cdk.io.iterator.IIteratingChemObjectReader

public class IteratingChemObjectReaderWrapper
extends org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader

A wrapper for DefaultChemObjectReader. Mostly for keeping track of file name and presenting it to the user :)

Author:

Nina Jeliazkova nina@acad.bg Modified Aug 31, 2006

Nested Class Summary

Nested classes/interfaces inherited from interface org.openscience.cdk.io.IChemObjectReader

org.openscience.cdk.io.IChemObjectReader.Mode

Field Summary

Fields

Modifier and Type	Field and Description
protected org.openscience.cdk.interfaces.IAtomContainerSet	atomContainers
protected org.openscience.cdk.interfaces.IChemObject	chemObject
protected org.openscience.cdk.io.formats.IResourceFormat	format
protected int	record

Fields inherited from class org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader

errorHandler, mode

Constructor Summary

Constructors

Constructor and Description
IteratingChemObjectReaderWrapper(org.openscience.cdk.io.DefaultChemObjectReader reader)

Method Summary

Modifier and Type	Method and Description
void	close()
org.openscience.cdk.io.formats.IResourceFormat	getFormat()
boolean	hasNext()
Object	next()
void	setReader(InputStream reader)
void	setReader(Reader reader)
String	toString()

Methods inherited from class org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader

accepts, handleError, handleError, handleError, handleError, remove, setErrorHandler, setReaderMode

Methods inherited from class org.openscience.cdk.io.ChemObjectIO

addChemObjectIOListener, addSetting, addSettings, fireIOSettingQuestion, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.openscience.cdk.io.IChemObjectIO

addChemObjectIOListener, addSetting, addSettings, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener

Methods inherited from interface java.util.Iterator

forEachRemaining

Field Detail

chemObject

protected org.openscience.cdk.interfaces.IChemObject chemObject

format

protected org.openscience.cdk.io.formats.IResourceFormat format

atomContainers

protected org.openscience.cdk.interfaces.IAtomContainerSet atomContainers

record

protected int record

Constructor Detail

IteratingChemObjectReaderWrapper

public IteratingChemObjectReaderWrapper(org.openscience.cdk.io.DefaultChemObjectReader reader)

Method Detail

setReader

public void setReader(InputStream reader)
               throws org.openscience.cdk.exception.CDKException

Throws:

org.openscience.cdk.exception.CDKException

setReader

public void setReader(Reader reader)
               throws org.openscience.cdk.exception.CDKException

Throws:

org.openscience.cdk.exception.CDKException

getFormat

public org.openscience.cdk.io.formats.IResourceFormat getFormat()

close

public void close()
           throws IOException

Throws:

IOException

hasNext

public boolean hasNext()

next

public Object next()

toString

public String toString()

Overrides:

toString in class Object