ambit2.core.io

Class PDFWriter

java.lang.Object

org.openscience.cdk.io.ChemObjectIO

org.openscience.cdk.io.DefaultChemObjectWriter

ambit2.core.io.FilesWithHeaderWriter

ambit2.core.io.PDFWriter

All Implemented Interfaces:

Closeable, AutoCloseable, org.openscience.cdk.io.IChemObjectIO, org.openscience.cdk.io.IChemObjectWriter

public class PDFWriter
extends FilesWithHeaderWriter

Exporting set of structures as PDF file.

Author:

Nina Jeliazkova nina@acad.bg Modified Feb 2, 2008

Field Summary

Fields

Modifier and Type	Field and Description
protected Dimension	cell
protected ICompoundImageTools	imageTools
protected com.lowagie.text.Document	pdfDoc
protected com.lowagie.text.pdf.PdfWriter	pdfWriter
protected com.lowagie.text.pdf.PdfPTable	table

Fields inherited from class ambit2.core.io.FilesWithHeaderWriter

addSMILEScolumn, defaultSMILESHeader, header, logger, smilesIndex, writingStarted

Constructor Summary

Constructors

Constructor and Description
PDFWriter(OutputStream outputStream)
PDFWriter(OutputStream outputStream, ICompoundImageTools imgTools)

Method Summary

Modifier and Type	Method and Description
boolean	accepts(Class classObject)
void	close()
org.openscience.cdk.io.formats.IResourceFormat	getFormat()
int	getSupportedDataFeatures()
void	setWriter(OutputStream out)
void	setWriter(Writer arg0)
void	write(org.openscience.cdk.interfaces.IChemObject object)
protected void	writeHeader()
void	writeMolecule(org.openscience.cdk.interfaces.IAtomContainer molecule)
void	writeSetOfMolecules(org.openscience.cdk.interfaces.IAtomContainerSet som)

Methods inherited from class ambit2.core.io.FilesWithHeaderWriter

getHeader, isAddSMILEScolumn, setAddSMILEScolumn, setHeader, setHeader

Methods inherited from class org.openscience.cdk.io.ChemObjectIO

addChemObjectIOListener, addSetting, addSettings, fireIOSettingQuestion, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.openscience.cdk.io.IChemObjectIO

addChemObjectIOListener, addSetting, addSettings, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener

Field Detail

pdfDoc

protected com.lowagie.text.Document pdfDoc

pdfWriter

protected com.lowagie.text.pdf.PdfWriter pdfWriter

table

protected com.lowagie.text.pdf.PdfPTable table

imageTools

protected ICompoundImageTools imageTools

cell

protected Dimension cell

Constructor Detail

PDFWriter

public PDFWriter(OutputStream outputStream)
          throws org.openscience.cdk.exception.CDKException

Throws:

org.openscience.cdk.exception.CDKException

PDFWriter

public PDFWriter(OutputStream outputStream,
                 ICompoundImageTools imgTools)
          throws org.openscience.cdk.exception.CDKException

Throws:

org.openscience.cdk.exception.CDKException

Method Detail

setWriter

public void setWriter(Writer arg0)
               throws org.openscience.cdk.exception.CDKException

Throws:

org.openscience.cdk.exception.CDKException

setWriter

public void setWriter(OutputStream out)
               throws org.openscience.cdk.exception.CDKException

Throws:

org.openscience.cdk.exception.CDKException

write

public void write(org.openscience.cdk.interfaces.IChemObject object)
           throws org.openscience.cdk.exception.CDKException

Throws:

org.openscience.cdk.exception.CDKException

accepts

public boolean accepts(Class classObject)

getSupportedDataFeatures

public int getSupportedDataFeatures()

close

public void close()
           throws IOException

Throws:

IOException

getFormat

public org.openscience.cdk.io.formats.IResourceFormat getFormat()

writeHeader

protected void writeHeader()
                    throws IOException

Specified by:

writeHeader in class FilesWithHeaderWriter

Throws:

IOException

writeSetOfMolecules

public void writeSetOfMolecules(org.openscience.cdk.interfaces.IAtomContainerSet som)

writeMolecule

public void writeMolecule(org.openscience.cdk.interfaces.IAtomContainer molecule)