ambit2.core.io

Class RawIteratingSDFReader

java.lang.Object

org.openscience.cdk.io.ChemObjectIO

org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader

ambit2.core.io.RawIteratingReader<IStructureRecord>

ambit2.core.io.RawIteratingSDFReader

All Implemented Interfaces:

ICiteable, IRawReader<IStructureRecord>, Closeable, AutoCloseable, Iterator, org.openscience.cdk.io.IChemObjectIO, org.openscience.cdk.io.IChemObjectReader, org.openscience.cdk.io.iterator.IIteratingChemObjectReader

public class RawIteratingSDFReader
extends RawIteratingReader<IStructureRecord>

Nested Class Summary

Nested classes/interfaces inherited from interface org.openscience.cdk.io.IChemObjectReader

org.openscience.cdk.io.IChemObjectReader.Mode

Field Summary

Fields

Modifier and Type	Field and Description
static String	delimiter
protected StructureRecord	r

Fields inherited from class ambit2.core.io.RawIteratingReader

input, logger, recordBuffer, reference

Fields inherited from class org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader

errorHandler, mode

Constructor Summary

Constructors

Constructor and Description
RawIteratingSDFReader(Reader in)

Method Summary

Modifier and Type	Method and Description
org.openscience.cdk.io.formats.IResourceFormat	getFormat()
boolean	isEndOfRecord(String line)
Object	next()
IStructureRecord	nextRecord()

Methods inherited from class ambit2.core.io.RawIteratingReader

acceptLastRecord, close, getReference, hasNext, setReader, setReader, setReference

Methods inherited from class org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader

accepts, handleError, handleError, handleError, handleError, remove, setErrorHandler, setReaderMode

Methods inherited from class org.openscience.cdk.io.ChemObjectIO

addChemObjectIOListener, addSetting, addSettings, fireIOSettingQuestion, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.openscience.cdk.io.IChemObjectReader

handleError, handleError, handleError, handleError, setErrorHandler, setReaderMode

Methods inherited from interface org.openscience.cdk.io.IChemObjectIO

accepts, addChemObjectIOListener, addSetting, addSettings, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener

Methods inherited from interface java.util.Iterator

forEachRemaining, remove

Field Detail

delimiter

public static final String delimiter

See Also:

Constant Field Values

r

protected final StructureRecord r

Constructor Detail

RawIteratingSDFReader

public RawIteratingSDFReader(Reader in)
                      throws org.openscience.cdk.exception.CDKException

Throws:

org.openscience.cdk.exception.CDKException

Method Detail

isEndOfRecord

public boolean isEndOfRecord(String line)

Specified by:

isEndOfRecord in class RawIteratingReader<IStructureRecord>

getFormat

public org.openscience.cdk.io.formats.IResourceFormat getFormat()

Specified by:

getFormat in interface org.openscience.cdk.io.IChemObjectIO

Specified by:

getFormat in class RawIteratingReader<IStructureRecord>

nextRecord

public IStructureRecord nextRecord()

Specified by:

nextRecord in interface IRawReader<IStructureRecord>

Specified by:

nextRecord in class RawIteratingReader<IStructureRecord>

next

public Object next()

Specified by:

next in interface Iterator

Overrides:

next in class RawIteratingReader<IStructureRecord>