ambit2.core.processors.structure

Class MoleculePairProcessor

java.lang.Object

net.idea.modbcum.p.DefaultAmbitProcessor<IStructureRecord[],IStructureRecord[]>

ambit2.core.processors.structure.MoleculePairProcessor

All Implemented Interfaces:

Serializable, net.idea.modbcum.i.processors.IProcessor<IStructureRecord[],IStructureRecord[]>

public abstract class MoleculePairProcessor
extends net.idea.modbcum.p.DefaultAmbitProcessor<IStructureRecord[],IStructureRecord[]>

Reads pair of structures

Author:

nina

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected org.openscience.cdk.interfaces.IAtomContainer[]	molecules
protected MoleculeReader	reader
protected Property	smartsProperty

Fields inherited from class net.idea.modbcum.p.DefaultAmbitProcessor

enabled, logger, propertyChangeSupport

Constructor Summary

Constructors

Constructor and Description
MoleculePairProcessor()

Method Summary

Modifier and Type	Method and Description
IStructureRecord[]	process(IStructureRecord[] target)
abstract IStructureRecord[]	process(IStructureRecord[] target, org.openscience.cdk.interfaces.IAtomContainer[] molecules)

Methods inherited from class net.idea.modbcum.p.DefaultAmbitProcessor

addPropertyChangeListener, addPropertyChangeListener, close, getID, isEnabled, open, removePropertyChangeListener, removePropertyChangeListener, setEnabled, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

reader

protected MoleculeReader reader

molecules

protected org.openscience.cdk.interfaces.IAtomContainer[] molecules

smartsProperty

protected Property smartsProperty

Constructor Detail

MoleculePairProcessor

public MoleculePairProcessor()

Method Detail

process

public IStructureRecord[] process(IStructureRecord[] target)
                           throws net.idea.modbcum.i.exceptions.AmbitException

Throws:

net.idea.modbcum.i.exceptions.AmbitException

process

public abstract IStructureRecord[] process(IStructureRecord[] target,
                                           org.openscience.cdk.interfaces.IAtomContainer[] molecules)