ambit2.db.processors

Class DbDescriptorValuesWriter

java.lang.Object

net.idea.modbcum.p.DefaultAmbitProcessor<Target,Result>

net.idea.modbcum.p.AbstractDBProcessor<Target,Result>

ambit2.db.processors.AbstractRepositoryWriter<Target,Result>

ambit2.db.processors.AbstractPropertyWriter<Target,Result>

ambit2.db.processors.ValueWriter<org.openscience.cdk.qsar.DescriptorValue,org.openscience.cdk.qsar.DescriptorValue>

ambit2.db.processors.DbDescriptorValuesWriter

All Implemented Interfaces:

Serializable, net.idea.modbcum.i.IDBProcessor<org.openscience.cdk.qsar.DescriptorValue,org.openscience.cdk.qsar.DescriptorValue>, net.idea.modbcum.i.processors.IProcessor<org.openscience.cdk.qsar.DescriptorValue,org.openscience.cdk.qsar.DescriptorValue>

public class DbDescriptorValuesWriter
extends ValueWriter<org.openscience.cdk.qsar.DescriptorValue,org.openscience.cdk.qsar.DescriptorValue>

Writes descriptor values into properties/property_values tables

Author:

nina

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class ambit2.db.processors.AbstractPropertyWriter

AbstractPropertyWriter.mode

Nested classes/interfaces inherited from class ambit2.db.processors.AbstractRepositoryWriter

AbstractRepositoryWriter.OP

Field Summary

Fields

Modifier and Type	Field and Description
protected DescriptorValue2Property	helper

Fields inherited from class ambit2.db.processors.ValueWriter

n_error, n_idchemical, n_idproperty, n_idstructure, n_text, n_value, n_value_num, onduplicate_number, ps_descriptorvalue_number, ps_descriptorvalue_string, ps_insertstring, structure

Fields inherited from class ambit2.db.processors.AbstractPropertyWriter

annotationsWriter, dataset, propertyWriter, readProperty, selectField, templateDefWriter

Fields inherited from class ambit2.db.processors.AbstractRepositoryWriter

exec, operation, queryexec

Fields inherited from class net.idea.modbcum.p.AbstractDBProcessor

closeConnection, connection

Fields inherited from class net.idea.modbcum.p.DefaultAmbitProcessor

enabled, logger, propertyChangeSupport

Constructor Summary

Constructors

Constructor and Description
DbDescriptorValuesWriter()

Method Summary

Modifier and Type	Method and Description
protected String	getComments(String name, org.openscience.cdk.qsar.DescriptorValue descriptor)
protected Iterable<Property>	getPropertyNames(org.openscience.cdk.qsar.DescriptorValue descriptor)
protected Object	getValue(org.openscience.cdk.qsar.DescriptorValue descriptor, Property property, int propertyIndex)
protected boolean	insertValue(double value, Property property, int idtuple, AbstractPropertyWriter.mode error)
protected boolean	insertValue(String value, Property property, int idtuple, AbstractPropertyWriter.mode error)
protected org.openscience.cdk.qsar.DescriptorValue	transform(org.openscience.cdk.qsar.DescriptorValue target)

Methods inherited from class ambit2.db.processors.ValueWriter

close, descriptorEntry, getStructure, getTuple, insertValueNaN, setStructure

Methods inherited from class ambit2.db.processors.AbstractPropertyWriter

getDataset, propertyEntry, setDataset, write, write

Methods inherited from class ambit2.db.processors.AbstractRepositoryWriter

create, delete, getOperation, open, prepareStatement, process, read, setConnection, setOperation, transaction, update

Methods inherited from class net.idea.modbcum.p.AbstractDBProcessor

getConnection, isCloseConnection, isEnabled, setCloseConnection

Methods inherited from class net.idea.modbcum.p.DefaultAmbitProcessor

addPropertyChangeListener, addPropertyChangeListener, getID, removePropertyChangeListener, removePropertyChangeListener, setEnabled, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.idea.modbcum.i.processors.IProcessor

getID, setEnabled

Field Detail

helper

protected DescriptorValue2Property helper

Constructor Detail

DbDescriptorValuesWriter

public DbDescriptorValuesWriter()

Method Detail

transform

protected org.openscience.cdk.qsar.DescriptorValue transform(org.openscience.cdk.qsar.DescriptorValue target)

Specified by:

transform in class AbstractPropertyWriter<org.openscience.cdk.qsar.DescriptorValue,org.openscience.cdk.qsar.DescriptorValue>

getComments

protected String getComments(String name,
                             org.openscience.cdk.qsar.DescriptorValue descriptor)

Specified by:

getComments in class AbstractPropertyWriter<org.openscience.cdk.qsar.DescriptorValue,org.openscience.cdk.qsar.DescriptorValue>

getPropertyNames

protected Iterable<Property> getPropertyNames(org.openscience.cdk.qsar.DescriptorValue descriptor)

Specified by:

getPropertyNames in class AbstractPropertyWriter<org.openscience.cdk.qsar.DescriptorValue,org.openscience.cdk.qsar.DescriptorValue>

getValue

protected Object getValue(org.openscience.cdk.qsar.DescriptorValue descriptor,
                          Property property,
                          int propertyIndex)

Specified by:

getValue in class ValueWriter<org.openscience.cdk.qsar.DescriptorValue,org.openscience.cdk.qsar.DescriptorValue>

insertValue

protected boolean insertValue(double value,
                              Property property,
                              int idtuple,
                              AbstractPropertyWriter.mode error)
                       throws SQLException

Overrides:

insertValue in class ValueWriter<org.openscience.cdk.qsar.DescriptorValue,org.openscience.cdk.qsar.DescriptorValue>

Throws:

SQLException

insertValue

protected boolean insertValue(String value,
                              Property property,
                              int idtuple,
                              AbstractPropertyWriter.mode error)
                       throws SQLException

Overrides:

insertValue in class ValueWriter<org.openscience.cdk.qsar.DescriptorValue,org.openscience.cdk.qsar.DescriptorValue>

Throws:

SQLException