ambit2.db.readers

Class AbstractStructureRetrieval<R>

java.lang.Object

ambit2.db.search.AbstractQuery<Boolean,IStructureRecord,net.idea.modbcum.q.conditions.EQCondition,R>

ambit2.db.readers.AbstractStructureRetrieval<R>

Type Parameters:

R -

All Implemented Interfaces:

Serializable, net.idea.modbcum.i.IParameterizedQuery<Boolean,IStructureRecord,net.idea.modbcum.q.conditions.EQCondition>, net.idea.modbcum.i.IQueryObject<R>, net.idea.modbcum.i.IQueryRetrieval<R>, net.idea.modbcum.i.IRetrieval<R>, net.idea.modbcum.i.IStatement

Direct Known Subclasses:

RetrieveAtomContainer, RetrieveStructure

public abstract class AbstractStructureRetrieval<R>
extends AbstractQuery<Boolean,IStructureRecord,net.idea.modbcum.q.conditions.EQCondition,R>
implements net.idea.modbcum.i.IQueryRetrieval<R>

Retrieve structures, given a chemical or structure ID. If FieldName is true, retrieves all structures per chemical

Author:

nina

See Also:

Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
protected static class	AbstractStructureRetrieval._sqlids

Field Summary

Fields

Modifier and Type	Field and Description
static String	sql

Fields inherited from class ambit2.db.search.AbstractQuery

condition, fieldname, id, logger, maxRecords, name, page, selected, value

Fields inherited from interface net.idea.modbcum.i.IQueryRetrieval

NaN

Constructor Summary

Constructors

Constructor and Description
AbstractStructureRetrieval()

Method Summary

Modifier and Type	Method and Description
double	calculateMetric(R object)
List<net.idea.modbcum.i.query.QueryParam>	getParameters()
String	getSQL()
boolean	isPrescreen()

Methods inherited from class ambit2.db.search.AbstractQuery

getCategory, getCondition, getFieldname, getId, getKey, getName, getPage, getPageSize, getValue, isSelected, setCondition, setFieldname, setId, setName, setPage, setPageSize, setSelected, setValue, stringify, supportsPaging, test, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.idea.modbcum.i.IQueryObject

getCategory, getId, getKey, getPage, getPageSize, setId, setPage, setPageSize, supportsPaging

Methods inherited from interface net.idea.modbcum.i.IRetrieval

getObject

Field Detail

sql

public static final String sql

See Also:

Constant Field Values

Constructor Detail

AbstractStructureRetrieval

public AbstractStructureRetrieval()

Method Detail

getSQL

public String getSQL()
              throws net.idea.modbcum.i.exceptions.AmbitException

Specified by:

getSQL in interface net.idea.modbcum.i.IQueryObject<R>

Throws:

net.idea.modbcum.i.exceptions.AmbitException

getParameters

public List<net.idea.modbcum.i.query.QueryParam> getParameters()
                                                        throws net.idea.modbcum.i.exceptions.AmbitException

Specified by:

getParameters in interface net.idea.modbcum.i.IQueryObject<R>

Throws:

net.idea.modbcum.i.exceptions.AmbitException

calculateMetric

public double calculateMetric(R object)

Specified by:

calculateMetric in interface net.idea.modbcum.i.IQueryRetrieval<R>

isPrescreen

public boolean isPrescreen()

Specified by:

isPrescreen in interface net.idea.modbcum.i.IQueryRetrieval<R>