ambit2.db.readers

Class RetrieveAtomContainer

java.lang.Object

ambit2.db.search.AbstractQuery<Boolean,IStructureRecord,net.idea.modbcum.q.conditions.EQCondition,R>

ambit2.db.readers.AbstractStructureRetrieval<org.openscience.cdk.interfaces.IAtomContainer>

ambit2.db.readers.RetrieveAtomContainer

All Implemented Interfaces:

Serializable, net.idea.modbcum.i.IParameterizedQuery<Boolean,IStructureRecord,net.idea.modbcum.q.conditions.EQCondition>, net.idea.modbcum.i.IQueryObject<org.openscience.cdk.interfaces.IAtomContainer>, net.idea.modbcum.i.IQueryRetrieval<org.openscience.cdk.interfaces.IAtomContainer>, net.idea.modbcum.i.IRetrieval<org.openscience.cdk.interfaces.IAtomContainer>, net.idea.modbcum.i.IStatement

public class RetrieveAtomContainer
extends AbstractStructureRetrieval<org.openscience.cdk.interfaces.IAtomContainer>

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class ambit2.db.readers.AbstractStructureRetrieval

AbstractStructureRetrieval._sqlids

Field Summary

Fields

Modifier and Type	Field and Description
protected RetrieveStructure	reader
protected MoleculeReader	transform

Fields inherited from class ambit2.db.readers.AbstractStructureRetrieval

sql

Fields inherited from class ambit2.db.search.AbstractQuery

condition, fieldname, id, logger, maxRecords, name, page, selected, value

Fields inherited from interface net.idea.modbcum.i.IQueryRetrieval

NaN

Constructor Summary

Constructors

Constructor and Description
RetrieveAtomContainer()

Method Summary

Modifier and Type	Method and Description
org.openscience.cdk.interfaces.IAtomContainer	getObject(ResultSet rs)
void	setValue(IStructureRecord value)

Methods inherited from class ambit2.db.readers.AbstractStructureRetrieval

calculateMetric, getParameters, getSQL, isPrescreen

Methods inherited from class ambit2.db.search.AbstractQuery

getCategory, getCondition, getFieldname, getId, getKey, getName, getPage, getPageSize, getValue, isSelected, setCondition, setFieldname, setId, setName, setPage, setPageSize, setSelected, stringify, supportsPaging, test, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.idea.modbcum.i.IQueryObject

getCategory, getId, getKey, getPage, getPageSize, setId, setPage, setPageSize, supportsPaging

Field Detail

transform

protected MoleculeReader transform

reader

protected RetrieveStructure reader

Constructor Detail

RetrieveAtomContainer

public RetrieveAtomContainer()

Method Detail

setValue

public void setValue(IStructureRecord value)

Specified by:

setValue in interface net.idea.modbcum.i.IParameterizedQuery<Boolean,IStructureRecord,net.idea.modbcum.q.conditions.EQCondition>

Overrides:

setValue in class AbstractQuery<Boolean,IStructureRecord,net.idea.modbcum.q.conditions.EQCondition,org.openscience.cdk.interfaces.IAtomContainer>

getObject

public org.openscience.cdk.interfaces.IAtomContainer getObject(ResultSet rs)
                                                        throws net.idea.modbcum.i.exceptions.AmbitException

Throws:

net.idea.modbcum.i.exceptions.AmbitException