ambit2.db.reporters

Class AbstractImageReporter<Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,OUTPUT>

java.lang.Object

net.idea.modbcum.p.DefaultAmbitProcessor<Target,Result>

net.idea.modbcum.p.AbstractDBProcessor<Q,Output>

net.idea.modbcum.r.QueryAbstractReporter<T,Q,Output>

net.idea.modbcum.r.QueryReporter<IStructureRecord,Q,OUTPUT>

ambit2.db.reporters.AbstractImageReporter<Q,OUTPUT>

All Implemented Interfaces:

Serializable, net.idea.modbcum.i.IDBProcessor<Q,OUTPUT>, net.idea.modbcum.i.processors.IProcessor<Q,OUTPUT>, net.idea.modbcum.i.reporter.Reporter<Q,OUTPUT>

Direct Known Subclasses:

ImageAreaReporter, ImageReporter

public abstract class AbstractImageReporter<Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,OUTPUT>
extends net.idea.modbcum.r.QueryReporter<IStructureRecord,Q,OUTPUT>

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected CreateStoredQuery	cache
protected UpdateExecutor<net.idea.modbcum.i.query.IQueryUpdate>	cacheUpdater
protected CompoundImageTools	depict
protected CachedImage<OUTPUT>	imageWrapper
protected Property	img
protected String	mainType
protected MoleculeReader	reader
protected ambit2.db.reporters.MyQuery	strucQuery
protected String	subType

Fields inherited from class net.idea.modbcum.r.QueryAbstractReporter

autoCommit, batch, licenseURI, maxRecords, output, processors, showFooter, showHeader, startTime, timeout

Fields inherited from class net.idea.modbcum.p.AbstractDBProcessor

closeConnection, connection

Fields inherited from class net.idea.modbcum.p.DefaultAmbitProcessor

enabled, logger, propertyChangeSupport

Constructor Summary

Constructors

Constructor and Description
AbstractImageReporter(String mainType, String subType)
AbstractImageReporter(String mainType, String subType, Dimension dimension)

Method Summary

Modifier and Type	Method and Description
protected String	cache(IStructureRecord item, BufferedImage image)
void	close()
protected CachedImage<OUTPUT>	createImage(IStructureRecord item)
protected CachedImage<OUTPUT>	createImageWrapper(BufferedImage image)
protected abstract CachedImage<OUTPUT>	getCached(IStructureRecord item)
protected File	getFilePath(String tmpDir, String dbName, String dimensions, IStructureRecord item, String ext)
protected String	getQueryName()
protected RetrieveStructureImagePath	initQuery(String mainType, String subType)
Object	processItem(IStructureRecord item)
protected void	processPath(CachedImage<OUTPUT> result, String path)
void	setConnection(Connection connection)

Methods inherited from class net.idea.modbcum.r.QueryAbstractReporter

createBatch, footer, getFileExtension, getLicenseURI, getMaxRecords, getOutput, getProcessors, getStartTime, getTimeout, header, isAutoCommit, isShowFooter, isShowHeader, process, setAutoCommit, setCloseConnection, setLicenseURI, setMaxRecords, setOutput, setProcessors, setShowFooter, setShowHeader, setStartTime, setTimeout, wrapup

Methods inherited from class net.idea.modbcum.p.AbstractDBProcessor

getConnection, isCloseConnection, isEnabled

Methods inherited from class net.idea.modbcum.p.DefaultAmbitProcessor

addPropertyChangeListener, addPropertyChangeListener, getID, open, removePropertyChangeListener, removePropertyChangeListener, setEnabled, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.idea.modbcum.i.processors.IProcessor

getID, isEnabled, open, setEnabled

Field Detail

depict

protected CompoundImageTools depict

reader

protected MoleculeReader reader

cache

protected CreateStoredQuery cache

cacheUpdater

protected UpdateExecutor<net.idea.modbcum.i.query.IQueryUpdate> cacheUpdater

strucQuery

protected ambit2.db.reporters.MyQuery strucQuery

mainType

protected String mainType

subType

protected String subType

img

protected Property img

imageWrapper

protected CachedImage<OUTPUT> imageWrapper

Constructor Detail

AbstractImageReporter

public AbstractImageReporter(String mainType,
                             String subType)

AbstractImageReporter

public AbstractImageReporter(String mainType,
                             String subType,
                             Dimension dimension)

Method Detail

initQuery

protected RetrieveStructureImagePath initQuery(String mainType,
                                               String subType)

createImageWrapper

protected CachedImage<OUTPUT> createImageWrapper(BufferedImage image)

getQueryName

protected String getQueryName()

setConnection

public void setConnection(Connection connection)
                   throws net.idea.modbcum.i.exceptions.DbAmbitException

Specified by:

setConnection in interface net.idea.modbcum.i.IDBProcessor<Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,OUTPUT>

Overrides:

setConnection in class net.idea.modbcum.p.AbstractDBProcessor<Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,OUTPUT>

Throws:

net.idea.modbcum.i.exceptions.DbAmbitException

close

public void close()
           throws Exception

Specified by:

close in interface net.idea.modbcum.i.processors.IProcessor<Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,OUTPUT>

Specified by:

close in interface net.idea.modbcum.i.reporter.Reporter<Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,OUTPUT>

Overrides:

close in class net.idea.modbcum.p.AbstractDBProcessor<Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,OUTPUT>

Throws:

Exception

cache

protected String cache(IStructureRecord item,
                       BufferedImage image)

getFilePath

protected File getFilePath(String tmpDir,
                           String dbName,
                           String dimensions,
                           IStructureRecord item,
                           String ext)

createImage

protected CachedImage<OUTPUT> createImage(IStructureRecord item)
                                   throws net.idea.modbcum.i.exceptions.AmbitException

Throws:

net.idea.modbcum.i.exceptions.AmbitException

processPath

protected void processPath(CachedImage<OUTPUT> result,
                           String path)

processItem

public Object processItem(IStructureRecord item)
                   throws net.idea.modbcum.i.exceptions.AmbitException

Specified by:

processItem in class net.idea.modbcum.r.QueryAbstractReporter<IStructureRecord,Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,OUTPUT>

Throws:

net.idea.modbcum.i.exceptions.AmbitException

getCached

protected abstract CachedImage<OUTPUT> getCached(IStructureRecord item)