ambit2.db.reporters

Class SmilesReporter<Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>>

java.lang.Object

net.idea.modbcum.p.DefaultAmbitProcessor<Target,Result>

net.idea.modbcum.p.AbstractDBProcessor<Q,Output>

net.idea.modbcum.r.QueryAbstractReporter<T,Q,Output>

net.idea.modbcum.r.QueryReporter<IStructureRecord,Q,Output>

ambit2.db.reporters.QueryStructureReporter<Q,Writer>

ambit2.db.reporters.SmilesReporter<Q>

All Implemented Interfaces:

Serializable, net.idea.modbcum.i.IDBProcessor<Q,Writer>, net.idea.modbcum.i.processors.IProcessor<Q,Writer>, net.idea.modbcum.i.reporter.Reporter<Q,Writer>

public class SmilesReporter<Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>>
extends QueryStructureReporter<Q,Writer>

See Also:

Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	SmilesReporter.Mode

Field Summary

Fields

Modifier and Type	Field and Description
protected Profile	groupProperties
protected Property	key
protected SmilesReporter.Mode	mode
protected Template	template
protected boolean	writeProperties

Fields inherited from class net.idea.modbcum.r.QueryAbstractReporter

autoCommit, batch, licenseURI, maxRecords, output, processors, showFooter, showHeader, startTime, timeout

Fields inherited from class net.idea.modbcum.p.AbstractDBProcessor

closeConnection, connection

Fields inherited from class net.idea.modbcum.p.DefaultAmbitProcessor

enabled, logger, propertyChangeSupport

Constructor Summary

Constructors

Constructor and Description
SmilesReporter()
SmilesReporter(boolean writeProperties, SmilesReporter.Mode mode, Template template)
SmilesReporter(boolean writeProperties, Template template)

Method Summary

Modifier and Type	Method and Description
void	footer(Writer output, Q query)
String	getFileExtension()
Profile	getGroupProperties()
SmilesReporter.Mode	getMode()
Template	getTemplate()
void	header(Writer output, Q query)
void	open()
Object	processItem(IStructureRecord item)
void	setGroupProperties(Profile gp)
void	setMode(SmilesReporter.Mode mode)
void	setTemplate(Template template)

Methods inherited from class ambit2.db.reporters.QueryStructureReporter

createBatch, isIncludeLicenseInTextFiles

Methods inherited from class net.idea.modbcum.r.QueryAbstractReporter

getLicenseURI, getMaxRecords, getOutput, getProcessors, getStartTime, getTimeout, isAutoCommit, isShowFooter, isShowHeader, process, setAutoCommit, setCloseConnection, setLicenseURI, setMaxRecords, setOutput, setProcessors, setShowFooter, setShowHeader, setStartTime, setTimeout, wrapup

Methods inherited from class net.idea.modbcum.p.AbstractDBProcessor

close, getConnection, isCloseConnection, isEnabled, setConnection

Methods inherited from class net.idea.modbcum.p.DefaultAmbitProcessor

addPropertyChangeListener, addPropertyChangeListener, getID, removePropertyChangeListener, removePropertyChangeListener, setEnabled, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.idea.modbcum.i.reporter.Reporter

close

Methods inherited from interface net.idea.modbcum.i.processors.IProcessor

getID, isEnabled, setEnabled

Field Detail

template

protected Template template

writeProperties

protected boolean writeProperties

groupProperties

protected Profile groupProperties

key

protected Property key

mode

protected SmilesReporter.Mode mode

Constructor Detail

SmilesReporter

public SmilesReporter()

SmilesReporter

public SmilesReporter(boolean writeProperties,
                      Template template)

SmilesReporter

public SmilesReporter(boolean writeProperties,
                      SmilesReporter.Mode mode,
                      Template template)

Method Detail

getGroupProperties

public Profile getGroupProperties()

setGroupProperties

public void setGroupProperties(Profile gp)

getMode

public SmilesReporter.Mode getMode()

setMode

public void setMode(SmilesReporter.Mode mode)

processItem

public Object processItem(IStructureRecord item)
                   throws net.idea.modbcum.i.exceptions.AmbitException

Specified by:

processItem in class net.idea.modbcum.r.QueryAbstractReporter<IStructureRecord,Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,Writer>

Throws:

net.idea.modbcum.i.exceptions.AmbitException

open

public void open()
          throws net.idea.modbcum.i.exceptions.DbAmbitException

Specified by:

open in interface net.idea.modbcum.i.processors.IProcessor<Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,Writer>

Overrides:

open in class net.idea.modbcum.p.DefaultAmbitProcessor<Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,Writer>

Throws:

net.idea.modbcum.i.exceptions.DbAmbitException

getTemplate

public Template getTemplate()

setTemplate

public void setTemplate(Template template)

footer

public void footer(Writer output,
                   Q query)

Specified by:

footer in class net.idea.modbcum.r.QueryAbstractReporter<IStructureRecord,Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,Writer>

header

public void header(Writer output,
                   Q query)

Specified by:

header in class net.idea.modbcum.r.QueryAbstractReporter<IStructureRecord,Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,Writer>

getFileExtension

public String getFileExtension()

Specified by:

getFileExtension in interface net.idea.modbcum.i.reporter.Reporter<Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,Writer>

Overrides:

getFileExtension in class net.idea.modbcum.r.QueryAbstractReporter<IStructureRecord,Q extends net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>,Writer>