ambit2.db.search.structure

Class QueryAtomEnvironment

java.lang.Object

ambit2.db.search.AbstractQuery<F,T,C,IStructureRecord>

ambit2.db.search.structure.AbstractStructureQuery<F,T,C>

ambit2.db.search.structure.QuerySimilarity<String,HashIntDescriptorResult,net.idea.modbcum.q.conditions.NumberCondition>

ambit2.db.search.structure.QueryAtomEnvironment

All Implemented Interfaces:

Serializable, net.idea.modbcum.i.IParameterizedQuery<String,HashIntDescriptorResult,net.idea.modbcum.q.conditions.NumberCondition>, net.idea.modbcum.i.IQueryObject<IStructureRecord>, net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>, net.idea.modbcum.i.IRetrieval<IStructureRecord>, net.idea.modbcum.i.IStatement

public class QueryAtomEnvironment
extends QuerySimilarity<String,HashIntDescriptorResult,net.idea.modbcum.q.conditions.NumberCondition>

Similarity via atom environment matrix /query/similarity?search=c1ccccc1O&threshold=0.5&mode=ae

Author:

nina

See Also:

Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	QueryAtomEnvironment.q_modifier

Nested classes/interfaces inherited from class ambit2.db.search.structure.AbstractStructureQuery

AbstractStructureQuery.FIELD_NAMES

Field Summary

Fields

Modifier and Type	Field and Description
protected QueryAtomEnvironment.q_modifier	qe

Fields inherited from class ambit2.db.search.structure.QuerySimilarity

forceOrdering, threshold

Fields inherited from class ambit2.db.search.structure.AbstractStructureQuery

chemicalsOnly, group, nanomaterial, order_descendant, where_group

Fields inherited from class ambit2.db.search.AbstractQuery

condition, fieldname, id, logger, maxRecords, name, page, selected, value

Fields inherited from interface net.idea.modbcum.i.IQueryRetrieval

NaN

Constructor Summary

Constructors

Constructor and Description
QueryAtomEnvironment()
QueryAtomEnvironment(QueryAtomEnvironment.q_modifier qe)

Method Summary

Modifier and Type	Method and Description
List<net.idea.modbcum.i.query.QueryParam>	getParameters()
QueryAtomEnvironment.q_modifier	getQModifier()
String	getSQL()
void	setQModifier(QueryAtomEnvironment.q_modifier qe)
String	toString()

Methods inherited from class ambit2.db.search.structure.QuerySimilarity

getThreshold, isForceOrdering, retrieveMetric, setForceOrdering, setThreshold

Methods inherited from class ambit2.db.search.structure.AbstractStructureQuery

calculateMetric, getObject, isChemicalsOnly, isNanomaterial, isOrder_descendant, isPreferredStructure, isPrescreen, retrieveStrucType, retrieveValue, setChemicalsOnly, setNanomaterial, setOrder_descendant

Methods inherited from class ambit2.db.search.AbstractQuery

getCategory, getCondition, getFieldname, getId, getKey, getName, getPage, getPageSize, getValue, isSelected, setCondition, setFieldname, setId, setName, setPage, setPageSize, setSelected, setValue, stringify, supportsPaging, test

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.idea.modbcum.i.IQueryObject

getCategory, getId, getKey, getPage, getPageSize, setId, setPage, setPageSize, supportsPaging

Field Detail

qe

protected QueryAtomEnvironment.q_modifier qe

Constructor Detail

QueryAtomEnvironment

public QueryAtomEnvironment()

QueryAtomEnvironment

public QueryAtomEnvironment(QueryAtomEnvironment.q_modifier qe)

Method Detail

getQModifier

public QueryAtomEnvironment.q_modifier getQModifier()

setQModifier

public void setQModifier(QueryAtomEnvironment.q_modifier qe)

getParameters

public List<net.idea.modbcum.i.query.QueryParam> getParameters()
                                                        throws net.idea.modbcum.i.exceptions.AmbitException

Throws:

net.idea.modbcum.i.exceptions.AmbitException

toString

public String toString()

Overrides:

toString in class QuerySimilarity<String,HashIntDescriptorResult,net.idea.modbcum.q.conditions.NumberCondition>

getSQL

public String getSQL()
              throws net.idea.modbcum.i.exceptions.AmbitException

Throws:

net.idea.modbcum.i.exceptions.AmbitException