ambit2.db.search.structure

Class QuerySimilarity<F,T,C extends net.idea.modbcum.i.IQueryCondition>

java.lang.Object

ambit2.db.search.AbstractQuery<F,T,C,IStructureRecord>

ambit2.db.search.structure.AbstractStructureQuery<F,T,C>

ambit2.db.search.structure.QuerySimilarity<F,T,C>

All Implemented Interfaces:

Serializable, net.idea.modbcum.i.IParameterizedQuery<F,T,C>, net.idea.modbcum.i.IQueryObject<IStructureRecord>, net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>, net.idea.modbcum.i.IRetrieval<IStructureRecord>, net.idea.modbcum.i.IStatement

Direct Known Subclasses:

QueryAtomEnvironment, QuerySimilarityBitset, QuerySimilarityStructure

public abstract class QuerySimilarity<F,T,C extends net.idea.modbcum.i.IQueryCondition>
extends AbstractStructureQuery<F,T,C>

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class ambit2.db.search.structure.AbstractStructureQuery

AbstractStructureQuery.FIELD_NAMES

Field Summary

Fields

Modifier and Type	Field and Description
protected boolean	forceOrdering
protected double	threshold

Fields inherited from class ambit2.db.search.structure.AbstractStructureQuery

chemicalsOnly, group, nanomaterial, order_descendant, where_group

Fields inherited from class ambit2.db.search.AbstractQuery

condition, fieldname, id, logger, maxRecords, name, page, selected, value

Fields inherited from interface net.idea.modbcum.i.IQueryRetrieval

NaN

Constructor Summary

Constructors

Constructor and Description
QuerySimilarity()

Method Summary

Modifier and Type	Method and Description
double	getThreshold()
boolean	isForceOrdering()
protected void	retrieveMetric(IStructureRecord record, ResultSet rs)
void	setForceOrdering(boolean forceOrdering)
void	setThreshold(double threshold)
String	toString()

Methods inherited from class ambit2.db.search.structure.AbstractStructureQuery

calculateMetric, getObject, isChemicalsOnly, isNanomaterial, isOrder_descendant, isPreferredStructure, isPrescreen, retrieveStrucType, retrieveValue, setChemicalsOnly, setNanomaterial, setOrder_descendant

Methods inherited from class ambit2.db.search.AbstractQuery

getCategory, getCondition, getFieldname, getId, getKey, getName, getPage, getPageSize, getValue, isSelected, setCondition, setFieldname, setId, setName, setPage, setPageSize, setSelected, setValue, stringify, supportsPaging, test

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.idea.modbcum.i.IQueryObject

getCategory, getId, getKey, getPage, getPageSize, getParameters, getSQL, setId, setPage, setPageSize, supportsPaging

Field Detail

threshold

protected double threshold

forceOrdering

protected boolean forceOrdering

Constructor Detail

QuerySimilarity

public QuerySimilarity()

Method Detail

isForceOrdering

public boolean isForceOrdering()

setForceOrdering

public void setForceOrdering(boolean forceOrdering)

setThreshold

public void setThreshold(double threshold)

getThreshold

public double getThreshold()

toString

public String toString()

Overrides:

toString in class AbstractQuery<F,T,C extends net.idea.modbcum.i.IQueryCondition,IStructureRecord>

retrieveMetric

protected void retrieveMetric(IStructureRecord record,
                              ResultSet rs)
                       throws SQLException

Overrides:

retrieveMetric in class AbstractStructureQuery<F,T,C extends net.idea.modbcum.i.IQueryCondition>

Throws:

SQLException