ambit2.db.search.structure.pairwise

Class ChemicalSpaceQuery

java.lang.Object

ambit2.db.search.AbstractQuery<ISourceDataset,Property,net.idea.modbcum.q.conditions.BooleanCondition,ChemSpaceCell>

ambit2.db.search.structure.pairwise.ChemicalSpaceQuery

All Implemented Interfaces:

Serializable, net.idea.modbcum.i.IParameterizedQuery<ISourceDataset,Property,net.idea.modbcum.q.conditions.BooleanCondition>, net.idea.modbcum.i.IQueryObject<ChemSpaceCell>, net.idea.modbcum.i.IQueryRetrieval<ChemSpaceCell>, net.idea.modbcum.i.IRetrieval<ChemSpaceCell>, net.idea.modbcum.i.IStatement, net.idea.modbcum.i.IStoredProcStatement

public class ChemicalSpaceQuery
extends AbstractQuery<ISourceDataset,Property,net.idea.modbcum.q.conditions.BooleanCondition,ChemSpaceCell>
implements net.idea.modbcum.i.IQueryRetrieval<ChemSpaceCell>, net.idea.modbcum.i.IStoredProcStatement

Author:

nina

See Also:

Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	ChemicalSpaceQuery.ChemSpaceMethod

Field Summary

Fields

Modifier and Type	Field and Description
protected ChemSpaceCell	cell
protected int	maxPoints
protected ChemicalSpaceQuery.ChemSpaceMethod	method
protected String	sql
protected double	threshold_dactivity
protected double	threshold_similarity

Fields inherited from class ambit2.db.search.AbstractQuery

condition, fieldname, id, logger, maxRecords, name, page, selected, value

Fields inherited from interface net.idea.modbcum.i.IQueryRetrieval

NaN

Constructor Summary

Constructors

Constructor and Description
ChemicalSpaceQuery()

Method Summary

Modifier and Type	Method and Description
double	calculateMetric(ChemSpaceCell object)
int	getMaxPoints()
ChemicalSpaceQuery.ChemSpaceMethod	getMethod()
ChemSpaceCell	getObject(ResultSet rs)
List<net.idea.modbcum.i.query.QueryParam>	getParameters()
String	getSQL()
void	getStoredProcedureOutVars(CallableStatement statement)
double	getThreshold_dactivity()
double	getThreshold_similarity()
boolean	isPrescreen()
void	registerOutParameters(CallableStatement statement)
void	setMaxPoints(int maxPoints)
void	setMethod(ChemicalSpaceQuery.ChemSpaceMethod method)
void	setThreshold_dactivity(double threshold_dactivity)
void	setThreshold_similarity(double threshold_similarity)
boolean	supportsPaging()
String	toString()

Methods inherited from class ambit2.db.search.AbstractQuery

getCategory, getCondition, getFieldname, getId, getKey, getName, getPage, getPageSize, getValue, isSelected, setCondition, setFieldname, setId, setName, setPage, setPageSize, setSelected, setValue, stringify, test

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.idea.modbcum.i.IQueryObject

getCategory, getId, getKey, getPage, getPageSize, setId, setPage, setPageSize

Field Detail

cell

protected ChemSpaceCell cell

method

protected ChemicalSpaceQuery.ChemSpaceMethod method

threshold_similarity

protected double threshold_similarity

threshold_dactivity

protected double threshold_dactivity

maxPoints

protected int maxPoints

sql

protected final String sql

See Also:

Constant Field Values

Constructor Detail

ChemicalSpaceQuery

public ChemicalSpaceQuery()

Method Detail

getThreshold_dactivity

public double getThreshold_dactivity()

setThreshold_dactivity

public void setThreshold_dactivity(double threshold_dactivity)

getThreshold_similarity

public double getThreshold_similarity()

setThreshold_similarity

public void setThreshold_similarity(double threshold_similarity)

getMethod

public ChemicalSpaceQuery.ChemSpaceMethod getMethod()

setMethod

public void setMethod(ChemicalSpaceQuery.ChemSpaceMethod method)

getMaxPoints

public int getMaxPoints()

setMaxPoints

public void setMaxPoints(int maxPoints)

getSQL

public String getSQL()
              throws net.idea.modbcum.i.exceptions.AmbitException

Specified by:

getSQL in interface net.idea.modbcum.i.IQueryObject<ChemSpaceCell>

Throws:

net.idea.modbcum.i.exceptions.AmbitException

registerOutParameters

public void registerOutParameters(CallableStatement statement)
                           throws SQLException

Specified by:

registerOutParameters in interface net.idea.modbcum.i.IStoredProcStatement

Throws:

SQLException

getParameters

public List<net.idea.modbcum.i.query.QueryParam> getParameters()
                                                        throws net.idea.modbcum.i.exceptions.AmbitException

Specified by:

getParameters in interface net.idea.modbcum.i.IQueryObject<ChemSpaceCell>

Throws:

net.idea.modbcum.i.exceptions.AmbitException

getObject

public ChemSpaceCell getObject(ResultSet rs)
                        throws net.idea.modbcum.i.exceptions.AmbitException

Specified by:

getObject in interface net.idea.modbcum.i.IRetrieval<ChemSpaceCell>

Throws:

net.idea.modbcum.i.exceptions.AmbitException

calculateMetric

public double calculateMetric(ChemSpaceCell object)

Specified by:

calculateMetric in interface net.idea.modbcum.i.IQueryRetrieval<ChemSpaceCell>

isPrescreen

public boolean isPrescreen()

Specified by:

isPrescreen in interface net.idea.modbcum.i.IQueryRetrieval<ChemSpaceCell>

getStoredProcedureOutVars

public void getStoredProcedureOutVars(CallableStatement statement)
                               throws SQLException

Specified by:

getStoredProcedureOutVars in interface net.idea.modbcum.i.IStoredProcStatement

Throws:

SQLException

supportsPaging

public boolean supportsPaging()

Specified by:

supportsPaging in interface net.idea.modbcum.i.IQueryObject<ChemSpaceCell>

Overrides:

supportsPaging in class AbstractQuery<ISourceDataset,Property,net.idea.modbcum.q.conditions.BooleanCondition,ChemSpaceCell>

toString

public String toString()

Overrides:

toString in class AbstractQuery<ISourceDataset,Property,net.idea.modbcum.q.conditions.BooleanCondition,ChemSpaceCell>