ambit2.db.substance.ids

Class ReadChemIdentifiersByComposition

java.lang.Object

net.idea.modbcum.q.query.AbstractQuery<SubstanceRecord,IStructureRecord,net.idea.modbcum.q.conditions.SetCondition,IStructureRecord>

ambit2.db.substance.properties.ReadChemPropertiesByComposition

ambit2.db.substance.ids.ReadChemIdentifiersByComposition

All Implemented Interfaces:

Serializable, net.idea.modbcum.i.IParameterizedQuery<SubstanceRecord,IStructureRecord,net.idea.modbcum.q.conditions.SetCondition>, net.idea.modbcum.i.IQueryObject<IStructureRecord>, net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>, net.idea.modbcum.i.IRetrieval<IStructureRecord>, net.idea.modbcum.i.IStatement

public class ReadChemIdentifiersByComposition
extends ReadChemPropertiesByComposition

compound identifiers for each of the substance composition components Retrieves

Author:

nina

See Also:

Serialized Form

Field Summary

Fields inherited from class ambit2.db.substance.properties.ReadChemPropertiesByComposition

record

Fields inherited from class net.idea.modbcum.q.query.AbstractQuery

condition, fieldname, id, logger, maxRecords, name, page, selected, value

Fields inherited from interface net.idea.modbcum.i.IQueryRetrieval

NaN

Constructor Summary

Constructors

Constructor and Description
ReadChemIdentifiersByComposition()

Method Summary

Modifier and Type	Method and Description
IStructureRecord	getObject(ResultSet rs)
protected String	getSQLTemplate()
protected boolean	isAllowed(CompositionRelation r)
SubstanceRecord	processDetail(SubstanceRecord target, IStructureRecord detail) Hack for merging dataset properties with substances; This is not necessarily correct, as the substance may have many components!

Methods inherited from class ambit2.db.substance.properties.ReadChemPropertiesByComposition

calculateMetric, getParameters, getRecord, getSQL, isPrescreen, setRecord

Methods inherited from class net.idea.modbcum.q.query.AbstractQuery

getCategory, getCondition, getFieldname, getId, getKey, getName, getPage, getPageSize, getValue, isSelected, setCondition, setFieldname, setId, setName, setPage, setPageSize, setSelected, setValue, supportsPaging, test, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.idea.modbcum.i.IQueryObject

getCategory, getId, getKey, getPage, getPageSize, setId, setPage, setPageSize, supportsPaging

Constructor Detail

ReadChemIdentifiersByComposition

public ReadChemIdentifiersByComposition()

Method Detail

getSQLTemplate

protected String getSQLTemplate()

Overrides:

getSQLTemplate in class ReadChemPropertiesByComposition

isAllowed

protected boolean isAllowed(CompositionRelation r)

Overrides:

isAllowed in class ReadChemPropertiesByComposition

getObject

public IStructureRecord getObject(ResultSet rs)
                           throws net.idea.modbcum.i.exceptions.AmbitException

Specified by:

getObject in interface net.idea.modbcum.i.IRetrieval<IStructureRecord>

Overrides:

getObject in class ReadChemPropertiesByComposition

Throws:

net.idea.modbcum.i.exceptions.AmbitException

processDetail

public SubstanceRecord processDetail(SubstanceRecord target,
                                     IStructureRecord detail)
                              throws Exception

Description copied from class: ReadChemPropertiesByComposition

Hack for merging dataset properties with substances; This is not necessarily correct, as the substance may have many components!

Overrides:

processDetail in class ReadChemPropertiesByComposition

Returns:

Throws:

Exception