ambit2.db.substance.properties

Class ReadChemPropertiesByComposition

java.lang.Object

net.idea.modbcum.q.query.AbstractQuery<SubstanceRecord,IStructureRecord,net.idea.modbcum.q.conditions.SetCondition,IStructureRecord>

ambit2.db.substance.properties.ReadChemPropertiesByComposition

All Implemented Interfaces:

Serializable, net.idea.modbcum.i.IParameterizedQuery<SubstanceRecord,IStructureRecord,net.idea.modbcum.q.conditions.SetCondition>, net.idea.modbcum.i.IQueryObject<IStructureRecord>, net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>, net.idea.modbcum.i.IRetrieval<IStructureRecord>, net.idea.modbcum.i.IStatement

Direct Known Subclasses:

ReadChemIdentifiersByComposition

public class ReadChemPropertiesByComposition
extends net.idea.modbcum.q.query.AbstractQuery<SubstanceRecord,IStructureRecord,net.idea.modbcum.q.conditions.SetCondition,IStructureRecord>
implements net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>

compound identifiers for each of the substance composition components Retrieves

Author:

nina

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected IStructureRecord	record

Fields inherited from class net.idea.modbcum.q.query.AbstractQuery

condition, fieldname, id, logger, maxRecords, name, page, selected, value

Fields inherited from interface net.idea.modbcum.i.IQueryRetrieval

NaN

Constructor Summary

Constructors

Constructor and Description
ReadChemPropertiesByComposition()

Method Summary

Modifier and Type	Method and Description
double	calculateMetric(IStructureRecord object)
IStructureRecord	getObject(ResultSet rs)
List<net.idea.modbcum.i.query.QueryParam>	getParameters()
IStructureRecord	getRecord()
String	getSQL()
protected String	getSQLTemplate()
protected boolean	isAllowed(CompositionRelation r)
boolean	isPrescreen()
SubstanceRecord	processDetail(SubstanceRecord target, IStructureRecord detail) Hack for merging dataset properties with substances; This is not necessarily correct, as the substance may have many components!
void	setRecord(IStructureRecord record)

Methods inherited from class net.idea.modbcum.q.query.AbstractQuery

getCategory, getCondition, getFieldname, getId, getKey, getName, getPage, getPageSize, getValue, isSelected, setCondition, setFieldname, setId, setName, setPage, setPageSize, setSelected, setValue, supportsPaging, test, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.idea.modbcum.i.IQueryObject

getCategory, getId, getKey, getPage, getPageSize, setId, setPage, setPageSize, supportsPaging

Field Detail

record

protected IStructureRecord record

Constructor Detail

ReadChemPropertiesByComposition

public ReadChemPropertiesByComposition()

Method Detail

getRecord

public IStructureRecord getRecord()

setRecord

public void setRecord(IStructureRecord record)

getSQLTemplate

protected String getSQLTemplate()

isAllowed

protected boolean isAllowed(CompositionRelation r)

getSQL

public String getSQL()
              throws net.idea.modbcum.i.exceptions.AmbitException

Specified by:

getSQL in interface net.idea.modbcum.i.IQueryObject<IStructureRecord>

Throws:

net.idea.modbcum.i.exceptions.AmbitException

getParameters

public List<net.idea.modbcum.i.query.QueryParam> getParameters()
                                                        throws net.idea.modbcum.i.exceptions.AmbitException

Specified by:

getParameters in interface net.idea.modbcum.i.IQueryObject<IStructureRecord>

Throws:

net.idea.modbcum.i.exceptions.AmbitException

getObject

public IStructureRecord getObject(ResultSet rs)
                           throws net.idea.modbcum.i.exceptions.AmbitException

Specified by:

getObject in interface net.idea.modbcum.i.IRetrieval<IStructureRecord>

Throws:

net.idea.modbcum.i.exceptions.AmbitException

isPrescreen

public boolean isPrescreen()

Specified by:

isPrescreen in interface net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>

calculateMetric

public double calculateMetric(IStructureRecord object)

Specified by:

calculateMetric in interface net.idea.modbcum.i.IQueryRetrieval<IStructureRecord>

processDetail

public SubstanceRecord processDetail(SubstanceRecord target,
                                     IStructureRecord detail)
                              throws Exception

Hack for merging dataset properties with substances; This is not necessarily correct, as the substance may have many components!

Parameters:

target -

detail -

Returns:

Throws:

Exception