ambit2.db.substance.processor

Class DBBundleStudyWriter

java.lang.Object

net.idea.modbcum.p.DefaultAmbitProcessor<Target,Result>

net.idea.modbcum.p.AbstractDBProcessor<IStructureRecord,IStructureRecord>

ambit2.db.substance.processor.DBSubstanceWriter

ambit2.db.substance.processor.DBBundleStudyWriter

All Implemented Interfaces:

Serializable, net.idea.modbcum.i.IDBProcessor<IStructureRecord,IStructureRecord>, net.idea.modbcum.i.processors.IProcessor<IStructureRecord,IStructureRecord>

public class DBBundleStudyWriter
extends DBSubstanceWriter

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected SubstanceEndpointsBundle	bundle
protected net.idea.modbcum.p.QueryExecutor	qx
protected ReadSubstance	rq

Fields inherited from class ambit2.db.substance.processor.DBSubstanceWriter

clearComposition, clearMeasurements, componentsMatch, i5mode, importBundles, importedRecord, keepEffectRecordsForDocUUID, splitRecord

Fields inherited from class net.idea.modbcum.p.AbstractDBProcessor

closeConnection, connection

Fields inherited from class net.idea.modbcum.p.DefaultAmbitProcessor

enabled, logger, propertyChangeSupport

Constructor Summary

Constructors

Constructor and Description
DBBundleStudyWriter(SubstanceEndpointsBundle bundle, SourceDataset dataset, SubstanceRecord importedRecord)

Method Summary

Modifier and Type	Method and Description
void	close()
protected UpdateEffectRecords	createEffectRecordUpdateQuery(ProtocolApplication papp, EffectRecord effect)
protected UpdateSubstanceStudy	createSubstanceStudyUpdateQuery(ProtocolApplication papp)
SubstanceEndpointsBundle	getBundle()
protected void	importSubstanceRecord(SubstanceRecord substance)
void	setBundle(SubstanceEndpointsBundle bundle)
void	setConnection(Connection connection)

Methods inherited from class ambit2.db.substance.processor.DBSubstanceWriter

datasetMeta, getDataset, getImportedRecord, importBundles, importSubstanceMeasurements, isClearComposition, isClearMeasurements, isI5mode, isImportBundles, isKeepEffectRecordsForDocUUID, isSplitRecord, open, process, setClearComposition, setClearMeasurements, setI5mode, setImportBundles, setImportedRecord, setKeepEffectRecordsForDocUUID, setSplitRecord

Methods inherited from class net.idea.modbcum.p.AbstractDBProcessor

getConnection, isCloseConnection, isEnabled, setCloseConnection

Methods inherited from class net.idea.modbcum.p.DefaultAmbitProcessor

addPropertyChangeListener, addPropertyChangeListener, getID, removePropertyChangeListener, removePropertyChangeListener, setEnabled, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.idea.modbcum.i.processors.IProcessor

getID, setEnabled

Field Detail

rq

protected ReadSubstance rq

qx

protected net.idea.modbcum.p.QueryExecutor qx

bundle

protected SubstanceEndpointsBundle bundle

Constructor Detail

DBBundleStudyWriter

public DBBundleStudyWriter(SubstanceEndpointsBundle bundle,
                           SourceDataset dataset,
                           SubstanceRecord importedRecord)

Method Detail

getBundle

public SubstanceEndpointsBundle getBundle()

setBundle

public void setBundle(SubstanceEndpointsBundle bundle)

setConnection

public void setConnection(Connection connection)
                   throws net.idea.modbcum.i.exceptions.DbAmbitException

Specified by:

setConnection in interface net.idea.modbcum.i.IDBProcessor<IStructureRecord,IStructureRecord>

Overrides:

setConnection in class DBSubstanceWriter

Throws:

net.idea.modbcum.i.exceptions.DbAmbitException

close

public void close()
           throws Exception

Specified by:

close in interface net.idea.modbcum.i.processors.IProcessor<IStructureRecord,IStructureRecord>

Overrides:

close in class DBSubstanceWriter

Throws:

Exception

createSubstanceStudyUpdateQuery

protected UpdateSubstanceStudy createSubstanceStudyUpdateQuery(ProtocolApplication papp)
                                                        throws Exception

Overrides:

createSubstanceStudyUpdateQuery in class DBSubstanceWriter

Throws:

Exception

createEffectRecordUpdateQuery

protected UpdateEffectRecords createEffectRecordUpdateQuery(ProtocolApplication papp,
                                                            EffectRecord effect)
                                                     throws Exception

Overrides:

createEffectRecordUpdateQuery in class DBSubstanceWriter

Throws:

Exception

importSubstanceRecord

protected void importSubstanceRecord(SubstanceRecord substance)
                              throws Exception

Overrides:

importSubstanceRecord in class DBSubstanceWriter

Throws:

Exception