ambit2.db.substance.processor

Class DBSubstanceWriter

java.lang.Object

net.idea.modbcum.p.DefaultAmbitProcessor<Target,Result>

net.idea.modbcum.p.AbstractDBProcessor<IStructureRecord,IStructureRecord>

ambit2.db.substance.processor.DBSubstanceWriter

All Implemented Interfaces:

Serializable, net.idea.modbcum.i.IDBProcessor<IStructureRecord,IStructureRecord>, net.idea.modbcum.i.processors.IProcessor<IStructureRecord,IStructureRecord>

Direct Known Subclasses:

DBBundleStudyWriter

public class DBSubstanceWriter
extends net.idea.modbcum.p.AbstractDBProcessor<IStructureRecord,IStructureRecord>

Writes IUCLID5 substances

Author:

nina

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected boolean	clearComposition
protected boolean	clearMeasurements
protected PropertyKey	componentsMatch
protected boolean	i5mode
protected boolean	importBundles
protected SubstanceRecord	importedRecord
protected boolean	keepEffectRecordsForDocUUID
protected boolean	splitRecord

Fields inherited from class net.idea.modbcum.p.AbstractDBProcessor

closeConnection, connection

Fields inherited from class net.idea.modbcum.p.DefaultAmbitProcessor

enabled, logger, propertyChangeSupport

Constructor Summary

Constructors

Constructor and Description
DBSubstanceWriter(SourceDataset dataset, SubstanceRecord importedRecord, boolean clearMeasurements, boolean clearComposition)
DBSubstanceWriter(SourceDataset dataset, SubstanceRecord importedRecord, boolean clearMeasurements, boolean clearComposition, IStructureKey matchByKey)

Method Summary

Modifier and Type	Method and Description
void	close()
protected UpdateEffectRecords	createEffectRecordUpdateQuery(ProtocolApplication papp, EffectRecord effect)
protected UpdateSubstanceStudy	createSubstanceStudyUpdateQuery(ProtocolApplication papp)
static SourceDataset	datasetMeta()
SourceDataset	getDataset()
SubstanceRecord	getImportedRecord()
protected void	importBundles(SubstanceRecord substance)
protected void	importSubstanceMeasurements(SubstanceRecord substance)
protected void	importSubstanceRecord(SubstanceRecord substance)
boolean	isClearComposition()
boolean	isClearMeasurements()
boolean	isI5mode()
boolean	isImportBundles()
boolean	isKeepEffectRecordsForDocUUID()
boolean	isSplitRecord()
void	open()
IStructureRecord	process(IStructureRecord record)
void	setClearComposition(boolean clearComposition)
void	setClearMeasurements(boolean clearMeasurements)
void	setConnection(Connection connection)
void	setI5mode(boolean i5mode)
void	setImportBundles(boolean importBundles)
void	setImportedRecord(SubstanceRecord importedRecord)
void	setKeepEffectRecordsForDocUUID(boolean keepEffectRecordsForDocUUID)
void	setSplitRecord(boolean splitRecord)

Methods inherited from class net.idea.modbcum.p.AbstractDBProcessor

getConnection, isCloseConnection, isEnabled, setCloseConnection

Methods inherited from class net.idea.modbcum.p.DefaultAmbitProcessor

addPropertyChangeListener, addPropertyChangeListener, getID, removePropertyChangeListener, removePropertyChangeListener, setEnabled, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.idea.modbcum.i.processors.IProcessor

getID, setEnabled

Field Detail

i5mode

protected boolean i5mode

clearMeasurements

protected boolean clearMeasurements

importBundles

protected boolean importBundles

keepEffectRecordsForDocUUID

protected boolean keepEffectRecordsForDocUUID

componentsMatch

protected PropertyKey componentsMatch

clearComposition

protected boolean clearComposition

splitRecord

protected boolean splitRecord

importedRecord

protected SubstanceRecord importedRecord

Constructor Detail

DBSubstanceWriter

public DBSubstanceWriter(SourceDataset dataset,
                         SubstanceRecord importedRecord,
                         boolean clearMeasurements,
                         boolean clearComposition)

DBSubstanceWriter

public DBSubstanceWriter(SourceDataset dataset,
                         SubstanceRecord importedRecord,
                         boolean clearMeasurements,
                         boolean clearComposition,
                         IStructureKey matchByKey)

Method Detail

isI5mode

public boolean isI5mode()

setI5mode

public void setI5mode(boolean i5mode)

isKeepEffectRecordsForDocUUID

public boolean isKeepEffectRecordsForDocUUID()

setKeepEffectRecordsForDocUUID

public void setKeepEffectRecordsForDocUUID(boolean keepEffectRecordsForDocUUID)

isImportBundles

public boolean isImportBundles()

setImportBundles

public void setImportBundles(boolean importBundles)

isClearMeasurements

public boolean isClearMeasurements()

setClearMeasurements

public void setClearMeasurements(boolean clearMeasurements)

isClearComposition

public boolean isClearComposition()

setClearComposition

public void setClearComposition(boolean clearComposition)

isSplitRecord

public boolean isSplitRecord()

setSplitRecord

public void setSplitRecord(boolean splitRecord)

getImportedRecord

public SubstanceRecord getImportedRecord()

setImportedRecord

public void setImportedRecord(SubstanceRecord importedRecord)

getDataset

public SourceDataset getDataset()

datasetMeta

public static SourceDataset datasetMeta()

setConnection

public void setConnection(Connection connection)
                   throws net.idea.modbcum.i.exceptions.DbAmbitException

Specified by:

setConnection in interface net.idea.modbcum.i.IDBProcessor<IStructureRecord,IStructureRecord>

Overrides:

setConnection in class net.idea.modbcum.p.AbstractDBProcessor<IStructureRecord,IStructureRecord>

Throws:

net.idea.modbcum.i.exceptions.DbAmbitException

close

public void close()
           throws Exception

Specified by:

close in interface net.idea.modbcum.i.processors.IProcessor<IStructureRecord,IStructureRecord>

Overrides:

close in class net.idea.modbcum.p.AbstractDBProcessor<IStructureRecord,IStructureRecord>

Throws:

Exception

createSubstanceStudyUpdateQuery

protected UpdateSubstanceStudy createSubstanceStudyUpdateQuery(ProtocolApplication papp)
                                                        throws Exception

Throws:

Exception

createEffectRecordUpdateQuery

protected UpdateEffectRecords createEffectRecordUpdateQuery(ProtocolApplication papp,
                                                            EffectRecord effect)
                                                     throws Exception

Throws:

Exception

importSubstanceMeasurements

protected void importSubstanceMeasurements(SubstanceRecord substance)
                                    throws Exception

Throws:

Exception

importBundles

protected void importBundles(SubstanceRecord substance)
                      throws Exception

Throws:

Exception

importSubstanceRecord

protected void importSubstanceRecord(SubstanceRecord substance)
                              throws Exception

Throws:

Exception

process

public IStructureRecord process(IStructureRecord record)
                         throws net.idea.modbcum.i.exceptions.AmbitException

Throws:

net.idea.modbcum.i.exceptions.AmbitException

open

public void open()
          throws net.idea.modbcum.i.exceptions.DbAmbitException

Specified by:

open in interface net.idea.modbcum.i.processors.IProcessor<IStructureRecord,IStructureRecord>

Overrides:

open in class net.idea.modbcum.p.DefaultAmbitProcessor<IStructureRecord,IStructureRecord>

Throws:

net.idea.modbcum.i.exceptions.DbAmbitException