Package ambit2.export.isa.v1_0.objects

Class Summary

Class	Description
Assay	Assay JSON Schema JSON Schema describing an Assay
ChemicalName
Comment	ISA comment schema - it corresponds to ISA Comment[] construct JSON-schema representing a comment in the ISA model
Component
Constituent	Constituent Definition of a constituent of a material or another constituent
Data	ISA data schema JSON-schema representing a data file in the ISA model
DataFile
Factor	ISA factor schema JSON-schema representing a factor value in the ISA model
FactorValue	ISA factor value schema JSON-schema representing a factor value in the ISA model
IntendedApplication
Investigation	ISA investigation schema JSON-schema representing an investigation in the ISA model
Linkage
Material	ISA material node schema JSON-schema representing a material node in the ISA model, which is not a source or a sample (as they have specific schemas) - this will correspond to 'Extract Name', 'Labeled Extract Name'
MaterialAttribute	ISA material attribute schema JSON-schema representing a characteristics category (what appears between the brackets in Charactersitics[]) in the ISA model
MaterialAttributeValue	ISA material attribute schema JSON-schema representing a material attribute (or characteristic) value in the ISA model
Materials
Materials_
McmMaterial	Material Definition of Material (or Substance)
McmType
OntologyAnnotation	ISA ontology reference schema JSON-schema representing an ontology reference or annotation in the ISA model (for fields that are required to be ontology annotations)
OntologySourceReference	ISA ontology source reference schema JSON-schema representing an ontology reference in the ISA model
Organization	ISA organization schema JSON-schema representing an organization in the ISA model v1.0
Person	ISA person schema JSON-schema representing a person in the ISA model
Process	ISA process or protocol application schema, corresponds to 'Protocol REF' columns in the study and assay files JSON-schema representing a protocol application in the ISA model
ProcessParameterValue	ISA process parameter value schema JSON-schema representing a Parameter Value (associated with a Protocol REF) in the ISA model
Protocol	ISA protocol schema JSON-schema representing a protocol in the ISA model
ProtocolParameter	ISA protocol parameter schema JSON-schema representing a parameter for a protocol (category declared in the investigation file) in the ISA model
Publication	ISA investigation schema JSON-schema representing an investigation in the ISA model
Sample	ISA sample schema JSON-schema representing a sample in the ISA model.
Source	ISA source schema JSON-schema representing a source in the ISA model.
Study	Study JSON Schema JSON Schema describing an Study
TechnologyType

Enum Summary

Enum	Description
Data.Type
Material.Type