Uses of Package
ambit2.export.isa.v1_0.objects

Packages that use ambit2.export.isa.v1_0.objects

Package	Description
ambit2.export.isa.v1_0
ambit2.export.isa.v1_0.objects

Classes in ambit2.export.isa.v1_0.objects used by ambit2.export.isa.v1_0

Class and Description
Assay Assay JSON Schema JSON Schema describing an Assay
Comment ISA comment schema - it corresponds to ISA Comment[] construct JSON-schema representing a comment in the ISA model
FactorValue ISA factor value schema JSON-schema representing a factor value in the ISA model
Investigation ISA investigation schema JSON-schema representing an investigation in the ISA model
MaterialAttributeValue ISA material attribute schema JSON-schema representing a material attribute (or characteristic) value in the ISA model
OntologyAnnotation ISA ontology reference schema JSON-schema representing an ontology reference or annotation in the ISA model (for fields that are required to be ontology annotations)
Protocol ISA protocol schema JSON-schema representing a protocol in the ISA model
Sample ISA sample schema JSON-schema representing a sample in the ISA model.
Source ISA source schema JSON-schema representing a source in the ISA model.
Study Study JSON Schema JSON Schema describing an Study

Classes in ambit2.export.isa.v1_0.objects used by ambit2.export.isa.v1_0.objects

Class and Description
Assay Assay JSON Schema JSON Schema describing an Assay
ChemicalName
Comment ISA comment schema - it corresponds to ISA Comment[] construct JSON-schema representing a comment in the ISA model
Component
Constituent Constituent Definition of a constituent of a material or another constituent
Data ISA data schema JSON-schema representing a data file in the ISA model
Data.Type
DataFile
Factor ISA factor schema JSON-schema representing a factor value in the ISA model
FactorValue ISA factor value schema JSON-schema representing a factor value in the ISA model
IntendedApplication
Linkage
Material ISA material node schema JSON-schema representing a material node in the ISA model, which is not a source or a sample (as they have specific schemas) - this will correspond to 'Extract Name', 'Labeled Extract Name'
Material.Type
MaterialAttribute ISA material attribute schema JSON-schema representing a characteristics category (what appears between the brackets in Charactersitics[]) in the ISA model
MaterialAttributeValue ISA material attribute schema JSON-schema representing a material attribute (or characteristic) value in the ISA model
Materials
Materials_
McmMaterial Material Definition of Material (or Substance)
McmType
OntologyAnnotation ISA ontology reference schema JSON-schema representing an ontology reference or annotation in the ISA model (for fields that are required to be ontology annotations)
OntologySourceReference ISA ontology source reference schema JSON-schema representing an ontology reference in the ISA model
Person ISA person schema JSON-schema representing a person in the ISA model
Process ISA process or protocol application schema, corresponds to 'Protocol REF' columns in the study and assay files JSON-schema representing a protocol application in the ISA model
ProcessParameterValue ISA process parameter value schema JSON-schema representing a Parameter Value (associated with a Protocol REF) in the ISA model
Protocol ISA protocol schema JSON-schema representing a protocol in the ISA model
ProtocolParameter ISA protocol parameter schema JSON-schema representing a parameter for a protocol (category declared in the investigation file) in the ISA model
Publication ISA investigation schema JSON-schema representing an investigation in the ISA model
Sample ISA sample schema JSON-schema representing a sample in the ISA model.
Source ISA source schema JSON-schema representing a source in the ISA model.
Study Study JSON Schema JSON Schema describing an Study
TechnologyType